Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00304 ATGTCGAACGCCGTCGAAGATCTCATCCTTCGCCACCGCCATCGCCACTCCGATTTCCGATTTCATCTCCTTCAATCTCGCTCTCACCATCGCGATATGTCTTCGTCGTCTGCTTCTTCTTCTTCTTCTTCAGCTCCAGCTCTTCCGCCTCTTTGTTTACTTCAGTGTCATCGGCCTTTTCCGCCGTCGGATCAGTCCAACGCTTGCAACTGCCGTCATGCTCCCGGCGCACATTCTACAGTTGCTACGCTCGACTTGAAACGAACATATGGTATCAATGACTCTGAGGCCTTGGCTTGTGGACGAGTTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTTATGTAAACCAGTATCCAGTGCAAATAAAAAGCAAAACAAAAAGTTGAAGTTGCAGAAAAATTCAAAGTCGAGGACTCAAAAATCCGTAGACGAGCCTATTGATGATCCTAATCTTTCTACCAACGGTCGGTACGACAGTTCATTAGGATTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGACTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTCGAGGGAATAGGGCTTATAGAGAAAACGACGACAAATCATATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTGGTAAACTAAAGGTGCCTTGCATTATAGCTGAAGTTAAAAGTTTGTATGCAGATGAACATAGACTTGATGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAATCACAGAAAGAATCTTTTTATAACGGAAGAAGATATCTTGCGAGTTCCTAGTTTCAAGAATCAAACACTCATAGCAGTACAAGCCCCTCAAGCTAGCTGTATTGAAGTGCCTGATCCGGATGAGGAAGCTTGTTTTTCTGAAAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGACTGCAAAACAAGGGCTGGAAGAAAATAGTTCCAAGCAAGCGAAACTATCTTCTTCGGTACAGCAGAGGAATCCCAACATACATACCAACAATATTTGTTCTCCTTTCCACGAATTTCATGGAATGCAGAGAATCTTACCTTTATATAATAATATAGACGATGATTATTGGTTCCAATCAAATTCTCAAGTGAGCATTACGCACTTATGGGGTGAGGAACACAACTTTTAA 1266 42.02 MSNAVEDLILRHRHRHSDFRFHLLQSRSHHRDMSSSSASSSSSSAPALPPLCLLQCHRPFPPSDQSNACNCRHAPGAHSTVATLDLKRTYGINDSEALACGRVVASEQRMRSNDSLCKPVSSANKKQNKKLKLQKNSKSRTQKSVDEPIDDPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDQVGKLKVPCIIAEVKSLYADEHRLDELIRMKQELLRNLEENANHRKNLFITEEDILRVPSFKNQTLIAVQAPQASCIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLLRTAKQGLEENSSKQAKLSSSVQQRNPNIHTNNICSPFHEFHGMQRILPLYNNIDDDYWFQSNSQVSITHLWGEEHNF 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1342930 1347293 - CmoCh05G003040.1 Cmo05g00304 382439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00304 421 MobiDBLite consensus disorder prediction 111 156 - -
Cmo05g00304 421 Coils Coil 256 279 - -
Cmo05g00304 421 SMART E2F_TDP_2 159 224 IPR003316 GO:0005667|GO:0006355
Cmo05g00304 421 Gene3D - 235 346 - -
Cmo05g00304 421 PANTHER TRANSCRIPTION FACTOR E2FC 28 418 - -
Cmo05g00304 421 SUPERFAMILY Winged helix DNA-binding domain 159 222 IPR036390 -
Cmo05g00304 421 MobiDBLite consensus disorder prediction 111 127 - -
Cmo05g00304 421 Pfam E2F/DP family winged-helix DNA-binding domain 161 224 IPR003316 GO:0005667|GO:0006355
Cmo05g00304 421 Pfam E2F transcription factor CC-MB domain 247 344 IPR032198 GO:0046983
Cmo05g00304 421 PANTHER TRANSCRIPTION FACTOR E2F 28 418 IPR015633 GO:0000978|GO:0006357
Cmo05g00304 421 Gene3D - 154 226 IPR036388 -
Cmo05g00304 421 SUPERFAMILY E2F-DP heterodimerization region 245 344 IPR037241 -
Cmo05g00304 421 CDD E2F_DD 235 344 IPR032198 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00304 Cmo12g00363 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00304 Cmo-Chr5:1342930 Cmo07g00858 Cmo-Chr7:4049258 2.29E-65 dispersed
Cmo12g00363 Cmo-Chr12:2246647 Cmo05g00304 Cmo-Chr5:1342930 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9802 PF16421 E2F_CC-MB 1.80E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00304 K06620 - csv:101211469 646.736