Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00313 ATGGAAAACAGTAATGGATTTTCCATTTGCGTATCGGTTGATAATTTTCGAATCTTAGTTCAATCCGCCGGTTATAACTTATTGTACAGGGACTTTGGAGATTTGAAGACGTTTGAGATGGGGAACACAATGGGAGGAGTATGTTCCAATGGAATAGACAAGGATTACTTCGAATCAGAGAAGATAACGCAAACATCTGAGGATCGGAAAGGGAATTCGTGTTTGAGTTCTGAGGCAATTGACCCGAATGAAATGCCGCAAAGGTCTCGTTCTGGTGTGACACTATTGCTCTCACCTCCGTCTAAGACAGGAAGCAATAAGGTTGCACCAGTGAACTCACAAGCAGGGTCACGCGGGAGGGCAATTGATTTATTGAAAACAATTGGGAATAGTGTGTCAAATTTGCACATGAACAGTGGGTTTTTTACAGGCATGGCTTCAAATGGTCGGGAGATCTCTATATTAGCTTTTGAAGTAGCTAATACAATAAGCAAAGTAGCGAATTTGTCACAATCTCTCTCAGAAGAAAACATCCAGCTTCTCAAAGAGGAACTTTTACAATCAGAAGGGATAAAACAATTAGTCTCAACAAGTTCAGAAGAATTGCTAAGCATTGCAGCTGCTGACAAAAGGCAGGAATTTGACGTTCTCTTAGGGGAGGTTATACGATTTGGAAAGCAGTGCAAGGATCCACAGTGGCATAATCTGGATCAGTACTTTTCAAGACTAGATTTGAATGATTCAAGTAAAAAACAAGCTCGAGAGGCCAGAGCAGCGATCCAGGAACTAGCTGTTTTAGCTCAGTCTACATCTATTGTAGAAAAGCTCGTTATTGTTGTAACATGGATAAACCAAACAATAGCCAAAACATTTGATGATCACAACACAGGTGCCTGCAATGGACCAGTCATTACAGATAAAACATTGCCTATTGAGGACAGAAGTAATGGCCAGAAACTGGGCTCTGTTGGTCTTGCCTTGCATTATGCAATCATAATCAGCCAGATAAATCTCATTGCGTGTCGCCCGACCTCCATTCCTTCAAATATGAGGGATGCATTATACCGGGCATTGCCTACAAGCGTTAAAATTGGTCTGCGCTCTCGATTGCGGAATGTGAATCTCAGTGAGGAGCCAACTTATATTGGTGTCAAAGCGGAAATGGATAAGATCCTTGAATGGCTTGTTCCAATAGCTGCAAACACGAGCAAGTAG 1215 41.81 MENSNGFSICVSVDNFRILVQSAGYNLLYRDFGDLKTFEMGNTMGGVCSNGIDKDYFESEKITQTSEDRKGNSCLSSEAIDPNEMPQRSRSGVTLLLSPPSKTGSNKVAPVNSQAGSRGRAIDLLKTIGNSVSNLHMNSGFFTGMASNGREISILAFEVANTISKVANLSQSLSEENIQLLKEELLQSEGIKQLVSTSSEELLSIAAADKRQEFDVLLGEVIRFGKQCKDPQWHNLDQYFSRLDLNDSSKKQAREARAAIQELAVLAQSTSIVEKLVIVVTWINQTIAKTFDDHNTGACNGPVITDKTLPIEDRSNGQKLGSVGLALHYAIIISQINLIACRPTSIPSNMRDALYRALPTSVKIGLRSRLRNVNLSEEPTYIGVKAEMDKILEWLVPIAANTSK 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1386253 1389695 + CmoCh05G003130.1 Cmo05g00313 382448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00313 404 PANTHER FACTOR G, PUTATIVE (DUF668)-RELATED 270 404 - -
Cmo05g00313 404 PANTHER FACTOR G, PUTATIVE (DUF668)-RELATED 44 271 - -
Cmo05g00313 404 PANTHER OS01G0873900 PROTEIN 270 404 IPR045021 GO:0045927
Cmo05g00313 404 Pfam Protein of unknown function (DUF668) 320 403 IPR007700 GO:0045927
Cmo05g00313 404 PANTHER OS01G0873900 PROTEIN 44 271 IPR045021 GO:0045927
Cmo05g00313 404 MobiDBLite consensus disorder prediction 62 91 - -
Cmo05g00313 404 MobiDBLite consensus disorder prediction 68 91 - -
Cmo05g00313 404 Pfam Domain of unknown function (DUF3475) 154 210 IPR021864 GO:0045927
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00313 - - - csv:101204577 499.204
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00313 Cmo12g00356 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00313 Cmo-Chr5:1386253 Cmo09g01159 Cmo-Chr9:7304022 4.51E-27 dispersed
Cmo12g00356 Cmo-Chr12:2209108 Cmo05g00313 Cmo-Chr5:1386253 4.77E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1123 Blo01g01602 . Bda01g00479 Bda03g00293 Bpe02g00621 Bpe04g00249 . Bma01g02372 Cmo05g00313 Cmo12g00356 . . . Car12g00382 Sed11g1091 . Cpe07g00361 Bhi04g00143 Tan02g2080 Cmetu03g0952 . Hepe10g0159 . Lcy13g1908 Cla08g01418 Cam08g1897 Cec08g1474 Cco08g1607 Clacu08g1589 . Cre08g1373 Cone4ag1976 Cone7ag1894 Cone17ag1409 Cone20ag0074 . . . Cme03g01874 . Blo18g00778 . . Bpe02g01728 Bpe05g00141 Bma01g00884 Bma05g00166 . . . Cma12g00405 Cma05g00311 Car05g00258 . Cpe11g00259 . . . . . . . . . . . . . . . Lsi08g01313 Csa02g02139 Chy03g01380 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003603 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 3 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00313 Cmo_Chr05 FPKM 5.988172 5.036161 0.741221 0.71664 1.254783 1.052343 1.073539 0.305347 0.0 0.341993