Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00314 ATGGCGGTCTCTGTTCATCATTTCTTATTGGCTTTCTTAAATCTGCTGCTGTTGGTACCAGGTGGGTTTTCAAGGAGCTTTACTTTTGTGAACAAATGTGAGTTCACGGTCTGGCCGGGGATTCTGTCGAACGGCGGCGTTCCGCCGCTTCCCACCACTGGATTCTCTCTCCAGACTGGGGATTCCAAGACGCTGCCGGCTCCGGCATCTTGGGGAGGGCGTTTCTGGGGGCGAACACTCTGCTCTGAAGATTCCACCGGGAAATTCTCCTGCGGCACCGGCGACTGTGGTTCTAACAAACTCGAGTGCGCCGGAAATGGAGCGACGCCGCCGGCGACTCTGGCGGAGTTTACTCTCGACGGCTCCGGCGGACTTGATTTCTTCGACGTTAGTCTCGTGGATGGTTATAATCTTCCGATGATAGTGGTACCACAGGGCGGCTCCGGCGATAACTGTACAAGCACAGGCTGCGTGGTGGATCTAAATGGCGCGTGCCCATCAGAGCTTCGTGTGACGAGTGCCGACGGAAGGGAGGGTGTCGCGTGTAAAAGCGCCTGTGATGCGTTTAACAAACCGCAGTATTGTTGCACGGGCGCGTACCAAACACCAGACACTTGCCAGCCGTCGATGTACTCTCAGATCTTCAAGAGTGCGTGCCCACGCGCTTACAGCTACGCGTACGACGACAAGACGAGCACCTTCACATGCGCCAGTGCTGATTACGTCATCACATTCTGTCCATCCCCAAACACAAGCCAAAAGTCATCGGAGGCGCAGAACTCACCGGCAACGGCGAACCCATCGTCCGGCGGTGATGGTGTGATGGTTTATGAAGGCGCATCCCTGATACAAATCAACGCAGCACCGCCGCACGTAGCCGGGATTTCAGTGGTCAGTGCGGTGGCGATTTGGTGGTTGTTGCAGCAGCTGTTCCTCTACTTCTGA 945 55.87 MAVSVHHFLLAFLNLLLLVPGGFSRSFTFVNKCEFTVWPGILSNGGVPPLPTTGFSLQTGDSKTLPAPASWGGRFWGRTLCSEDSTGKFSCGTGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMIVVPQGGSGDNCTSTGCVVDLNGACPSELRVTSADGREGVACKSACDAFNKPQYCCTGAYQTPDTCQPSMYSQIFKSACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSEAQNSPATANPSSGGDGVMVYEGASLIQINAAPPHVAGISVVSAVAIWWLLQQLFLYF 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1394117 1396782 + CmoCh05G003140.1 Cmo05g00314 382449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00314 314 Pfam Thaumatin family 31 247 IPR001938 -
Cmo05g00314 314 Gene3D Thaumatin 26 247 IPR037176 -
Cmo05g00314 314 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cmo05g00314 314 CDD TLP-PA 26 246 - -
Cmo05g00314 314 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Cmo05g00314 314 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cmo05g00314 314 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cmo05g00314 314 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cmo05g00314 314 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cmo05g00314 314 SMART tha2 27 247 IPR001938 -
Cmo05g00314 314 PANTHER BNAA02G17480D PROTEIN 17 272 - -
Cmo05g00314 314 PANTHER OS03G0233200 PROTEIN 17 272 IPR001938 -
Cmo05g00314 314 PIRSF PR5 1 285 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01060 Cmo05g00314 CCT
Cmo01g01060 Cmo05g00314 ECH
Cmo05g00314 Cmo12g00355 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00314 Cmo-Chr5:1394117 Cmo20g00761 Cmo-Chr20:3822026 7.71E-118 dispersed
Cmo05g00314 Cmo-Chr5:1394117 Cmo05g00315 Cmo-Chr5:1400618 4.73E-92 tandem
Cmo01g02036 Cmo-Chr1:14274908 Cmo05g00314 Cmo-Chr5:1394117 1.40E-135 wgd
Cmo12g00355 Cmo-Chr12:2200133 Cmo05g00314 Cmo-Chr5:1394117 9.72E-87 wgd
Cmo03g00705 Cmo-Chr3:6122594 Cmo05g00314 Cmo-Chr5:1394117 8.06E-105 wgd
Cmo05g00314 Cmo-Chr5:1394117 Cmo07g00418 Cmo-Chr7:1899508 2.44E-101 wgd
Cmo05g00314 Cmo-Chr5:1394117 Cmo09g00095 Cmo-Chr9:456782 9.80E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00314 - - csv:101204094 588.956