Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00315 ATGGGATTTCTTCGAACCCATTTTCTCTCTCCTCCATTTTTGTTTCTCTCTCTTCTTTTGATCGTCTTCTTTAATGGCGTTTATGGAGCTGGAATTACATTAATAAATAGATGCGATTACACAATTTGGCCGGGAGTTCTCGGAAACACCCAATTGGAATCAACTGGCTTCGAGCTCTCCCCTGGGGCGGCGCGTGCATTCCAACCGCCGCCGGGTTGGTCCGGCAGATTCTGGGGCCGGACAGGCTGTTCGTTCGACGCCGCCACCGGTCAAGGCAGCTGCCAGACAGCCGACTGTGGGTCAAACCAAATGGAATGCAATGGCAACGGAGCCACCCCACCCGCGACTCTAGCTGAGTTCACGATTGGTTCCGGTGGTGGCGCGATGGACTTTTACGATGTCAGTTTGGTCGACGGCTACAACATTCCGATGATGGTCGACTCCACTGGCGGGAGCGGCGCTTGTCAGTCGACTGGATGTGCGGCGGACCTGAACCGACGGTGCCCTGCGGAACTACGTGGTGGCGAGGGGAAAGCGTGTAGAAGCGCATGTGAGGCGTTTGGGAATCCGGAGTACTGTTGTAGCGGCGCGTATAACTCACCCGCCGCCTGTAAACCGTCGTTGTACTCGGAAATGTTTAAATCGGCTTGCCCCAAATCGTATAGCTACGCCTTTGATGATGCGTCAAGCACTTTTACTTGCAGTGGTGCAGATTACACCATCACATTCTGCCCTTCATCAGCAAGCCTTTATTTCTTTGGAACAGCTGCCTTTCATGATCTGAAAGGTGGTTGCTTGAGTTTGAATCCGAGTGATATGGTTGGTGGATGGTGGAGGTTTGCGGTGGCGATGGCGGCGGCGACGGCGGGGAACCTGCCGTAA 882 54.08 MGFLRTHFLSPPFLFLSLLLIVFFNGVYGAGITLINRCDYTIWPGVLGNTQLESTGFELSPGAARAFQPPPGWSGRFWGRTGCSFDAATGQGSCQTADCGSNQMECNGNGATPPATLAEFTIGSGGGAMDFYDVSLVDGYNIPMMVDSTGGSGACQSTGCAADLNRRCPAELRGGEGKACRSACEAFGNPEYCCSGAYNSPAACKPSLYSEMFKSACPKSYSYAFDDASSTFTCSGADYTITFCPSSASLYFFGTAAFHDLKGGCLSLNPSDMVGGWWRFAVAMAAATAGNLP 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1400618 1402404 + CmoCh05G003150.1 Cmo05g00315 382450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00315 293 Gene3D Thaumatin 30 245 IPR037176 -
Cmo05g00315 293 PANTHER OS03G0233200 PROTEIN 20 261 IPR001938 -
Cmo05g00315 293 ProSiteProfiles Thaumatin family profile. 29 245 IPR001938 -
Cmo05g00315 293 SUPERFAMILY Osmotin, thaumatin-like protein 32 246 IPR037176 -
Cmo05g00315 293 SMART tha2 32 245 IPR001938 -
Cmo05g00315 293 CDD TLP-PA 32 244 - -
Cmo05g00315 293 PRINTS Pathogenesis-related protein signature 55 64 IPR001938 -
Cmo05g00315 293 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Cmo05g00315 293 PRINTS Pathogenesis-related protein signature 130 146 IPR001938 -
Cmo05g00315 293 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Cmo05g00315 293 PRINTS Pathogenesis-related protein signature 31 43 IPR001938 -
Cmo05g00315 293 Pfam Thaumatin family 36 245 IPR001938 -
Cmo05g00315 293 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 20 261 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00315 Cmo09g00095 CCT
Cmo05g00315 Cmo09g00095 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00315 Cmo-Chr5:1400618 Cmo12g00355 Cmo-Chr12:2200133 2.23E-88 dispersed
Cmo05g00314 Cmo-Chr5:1394117 Cmo05g00315 Cmo-Chr5:1400618 4.73E-92 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00315 - - csv:101204331 460.299