Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00317 ATGAAAGTTTATACGACTGATGATAAAGAGTTGATCATGGAGCCATGCATGAAGTGGGCGGGAAATCCGAATGTTACCGTTTCAGTTAAAGCATTCGGATTGAAAGCGACTGTTCAGGTGGTCGATTTGCAAGTGTTCGCTATTCCGCGTATAACCCTGAAGCCTTTGGTCCCGACATTTCCATGCTTCGCCAAAATATTTGTCTCTCTAATGGAGAAGCCCCATGTCGATTTTGGGCTGAAATTGCTCGGTGCAGATGCGATGGCCATCCCGGGGCTGTATAGGTTTGTTCAGGAACTCATAAAAGATCAAGTTGCCAATATGTATCTATGGCCGAAGACCCTCGAAGTACCGATAATGGATCCTGCAAAAGCCATGAAGAAACCTGTTGGCATCCTTCATGTGAAGGTTTTGAAAGCAATGAAGCTGAAAAAGAAAGATCTATTTGGGGCTTCTGATCCATATCTGAAACTGAAGCTCACTGAAGACAAGCTTCCTTCTAAGAAAACGACTGTGAAACACACGAATTTGAACCCGGTTTGGAACGAGGAGTTTACTTTTGTCGTGAAAGATCCCGAGTCTCAAGCTTTGGAACTGATTCTTTACGATTGGGAGCAGGTTGGGAAGCATGATAAGATGGGAATGAATGTTGTTCCACTGAAAGAACTTACACCCGAGGAGTCCAAGGAATTGACTCTTGAAGTGTTGAAAAATATGGATCCTAACGATACACAAAACGAGAAGTCGAGAGGGCAGCTTGTCGTGGAATTGTTGTACAAACCTTTCAAGGACGACGAAGCTCCGAAAGATGATGGTGATGATGCAGCGGCAGTACAAAAGGCTCCCGATGGAACGCCCGATGGCGGAGGCCTGCTTGTTGTCATAATCCATCAAGCTGAAGATGTGGAAGGGAAGCATCATACGAACCCCTACGTTCGTTTACTTTTCAGAGGAGAGGAGAAACGAACTAAGCATGTTAAGAAGAACCGGGATCCAAGATGGGACGAGGAGTTCCAGTTTACGCTCGAGGAGCCACCGGTGAACGATCGGATTCATGTGGAAGTACTGAGTGCATCTTCAAGGATAGGCCTGCTTCACCCCAAGGAAACTTTGGGGTATGTGGACATAAACTTAGCTGATGTCGTCTCAAACAAGAGGATTAATGCGAAATATCATCTGATCGACTCGAAGAACGGGAGGATCCAAATCGAGCTACAATGGAGAACTTCATCATAG 1236 45.47 MKVYTTDDKELIMEPCMKWAGNPNVTVSVKAFGLKATVQVVDLQVFAIPRITLKPLVPTFPCFAKIFVSLMEKPHVDFGLKLLGADAMAIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILHVKVLKAMKLKKKDLFGASDPYLKLKLTEDKLPSKKTTVKHTNLNPVWNEEFTFVVKDPESQALELILYDWEQVGKHDKMGMNVVPLKELTPEESKELTLEVLKNMDPNDTQNEKSRGQLVVELLYKPFKDDEAPKDDGDDAAAVQKAPDGTPDGGGLLVVIIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFTLEEPPVNDRIHVEVLSASSRIGLLHPKETLGYVDINLADVVSNKRINAKYHLIDSKNGRIQIELQWRTSS 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1408159 1410216 - CmoCh05G003170.1 Cmo05g00317 382452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00317 411 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 290 408 IPR035892 -
Cmo05g00317 411 MobiDBLite consensus disorder prediction 264 284 - -
Cmo05g00317 411 CDD C2 133 230 - -
Cmo05g00317 411 Pfam C2 domain 131 231 IPR000008 -
Cmo05g00317 411 Pfam C2 domain 291 393 IPR000008 -
Cmo05g00317 411 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 1 120 IPR031468 GO:0008289
Cmo05g00317 411 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 409 - -
Cmo05g00317 411 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 127 263 IPR035892 -
Cmo05g00317 411 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 409 IPR045050 GO:0008289
Cmo05g00317 411 ProSiteProfiles C2 domain profile. 270 391 IPR000008 -
Cmo05g00317 411 Gene3D C2 domain 291 410 IPR035892 -
Cmo05g00317 411 PRINTS C2 domain signature 148 160 IPR000008 -
Cmo05g00317 411 PRINTS C2 domain signature 175 188 IPR000008 -
Cmo05g00317 411 PRINTS C2 domain signature 197 205 IPR000008 -
Cmo05g00317 411 Gene3D C2 domain 126 283 IPR035892 -
Cmo05g00317 411 ProSiteProfiles C2 domain profile. 111 233 IPR000008 -
Cmo05g00317 411 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 2 119 IPR039010 -
Cmo05g00317 411 SMART C2_3c 291 390 IPR000008 -
Cmo05g00317 411 SMART C2_3c 132 232 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00317 - - - cmax:111491745 788.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00317 Cmo-Chr5:1408159 Cmo20g00751 Cmo-Chr20:3765811 0 dispersed
Cmo13g00054 Cmo-Chr13:319626 Cmo05g00317 Cmo-Chr5:1408159 7.20E-06 dispersed
Cmo12g00352 Cmo-Chr12:2174534 Cmo05g00317 Cmo-Chr5:1408159 0 wgd
Cmo19g00743 Cmo-Chr19:7626721 Cmo05g00317 Cmo-Chr5:1408159 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1140 . . . . . . . . Cmo05g00317 . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0067 . . . . . . . . . Bpe05g00147 . Bma05g00171 . . . . Cma05g00316 Car05g00262 . Cpe11g00263 . . . . . . . . . . . . . . . . Csa02g02145 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00317 Cmo_Chr05 FPKM 16.818056 14.423866 15.043597 14.528768 17.809334 19.823385 18.428139 31.175745 35.730976 31.906937