Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00324 ATGGCGAAACTTCCTTTGATCTTCGCTTTTTCTCTTGCTCTCTCCGATTTCTTCTTCTTTTCCGGCAATGCTTTTGCGCCGTCGGGATGGAACCCCGCCCACGCCACCTTCTACGGCGACAGCGACGCCTCAGGGACAATGGGCGGAGCTTGTGGGTATGGGAACTTGTACCAGACGGGTTATGGGACGAGAACGGCGGCGCTGAGTACGGCGCTGTTTAACGACGGTGCATCGTGCGGTCAATGCTTCAAGATCATTTGTGATTACAAGACGGATCCACGGTGGTGCATTAAAGGGGCGTCGGTGACCGTGACGGCGACCAATTTCTGCCCTCCTAACTATGCTCTGCCCAACAACAATGGCGGTTGGTGTAATCCTCCGCTTAAGCACTTCGACATGGCTCAGCCTGCTTGGCAGAAGATCGGCATTTACAGAGGCGGAATCATCCCCGTCCTCTTCCAAAGAGTTCCGTGCATGAAGAAAGGAGGCGTGAGATTCACGGTGAATGGACGAGACTATTTTGAGCTAGTTTTGATAAGCAACGTGGGAGGGGCTGGATCCATCCAATCGGTATCCATCAAAGGCTCCAAATCCGGCAATTGGACGCCAATGTCGAGGAACTGGGGCGCCAATTGGCAGTCCAATTCCTATCTAAATGGCCAATCTTTGTCCTTCAAGATCACCACTAGCGATGGCCAGACCAGAGTGTTCAATAATGTTGTGCCTTCAAGCTGGCGGTTCGGCCAGACATTTGGAAGCAAGGTCCAATTCAGCTGA 777 52.64 MAKLPLIFAFSLALSDFFFFSGNAFAPSGWNPAHATFYGDSDASGTMGGACGYGNLYQTGYGTRTAALSTALFNDGASCGQCFKIICDYKTDPRWCIKGASVTVTATNFCPPNYALPNNNGGWCNPPLKHFDMAQPAWQKIGIYRGGIIPVLFQRVPCMKKGGVRFTVNGRDYFELVLISNVGGAGSIQSVSIKGSKSGNWTPMSRNWGANWQSNSYLNGQSLSFKITTSDGQTRVFNNVVPSSWRFGQTFGSKVQFS 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1440978 1442632 + CmoCh05G003240.1 Cmo05g00324 382459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00324 258 PANTHER EXPANSIN-A15 16 257 IPR002963 GO:0009664
Cmo05g00324 258 Gene3D - 163 258 IPR036749 -
Cmo05g00324 258 PANTHER EXPANSIN 16 257 - -
Cmo05g00324 258 SMART dpbb_1 65 153 IPR007112 -
Cmo05g00324 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Cmo05g00324 258 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Cmo05g00324 258 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Cmo05g00324 258 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Cmo05g00324 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Cmo05g00324 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cmo05g00324 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Cmo05g00324 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Cmo05g00324 258 SUPERFAMILY Barwin-like endoglucanases 18 181 IPR036908 -
Cmo05g00324 258 Pfam Lytic transglycolase 65 152 IPR009009 -
Cmo05g00324 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Cmo05g00324 258 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Cmo05g00324 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cmo05g00324 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Cmo05g00324 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Cmo05g00324 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Cmo05g00324 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Cmo05g00324 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Cmo05g00324 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cmo05g00324 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Cmo05g00324 258 Gene3D - 20 159 IPR036908 -
Cmo05g00324 258 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00324 Cmo-Chr5:1440978 Cmo04g01748 Cmo-Chr4:8826880 1.48E-118 dispersed
Cmo12g00346 Cmo-Chr12:2146053 Cmo05g00324 Cmo-Chr5:1440978 2.31E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00324 - - csv:101216569 498.819