Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00331 ATGAATGGTAATGATGCGGAGCCGTTGGTGTACGTGCACGGCGATCTCGATTTGAAGATCATTGAGGCGCGGCGTTTGCCTAATATGGATTTGCTAACGGAGCGTATTCGGCGGTTTTTTACTGTTTTTACTTCTTGTCGGAAACCGTTTTCCAAGAACGATGAGGATGAACACAAGCGCCACCGGAAGATTATTACTAGTGATCCTTACGTCACCGTTTGTCTTGCGGGAGCAACGGTTGCTCGGACGCGAGTTATTTCGAACTCGCAGAACCCTATCTGGAACGAGCACTTCAAAATATCTCTTGCTCATCCGGTCTCGCAGGTGGAGTTTCATGTGAAGGATAACGATGTGTTTGGTGCGGATTTGATTGGCATTGCGACGGTCCCTGCGCGCAGAGTTCTTTCTGGCGAAGTCATTGATGATTGGTTTCCGATTATCGGTTCGTTTGGGAAACCGCCTAAGCCGGATTCGGCTGTACGCTTGGAAATGAAATTCACGAAGTGCGAGGACAATCCTCTGTACCGTCAAGGCATTGCAGCCGATCCCGAACATTTTGGCGTTCGGAATTGCTATTTCCCGGTACGCCATGGGGGTTCGGTAACGCTTTATCAGGACGCGCATGTTCCCGATAACATGTTGGAGGAGATTGAATTGGAAAAGGGGAATTTGTATCAGCATGAGAATTGCTGGGAGGATATATGCCATGCCATTTTGGAGGCTCACCATTTAGTCTACATCGCTGGTTGGTCCATATATCATAAGGTGAAATTGGTGAGAGAGCCTTCAAAGCCGTTGCCCAATGGTGGGGATTTGAACTTGGGAGAGTTGCTCAAGTACAAGTCTCAAGAAGGGGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAGTTCTTCATTAACACGACTGGAGTGATGCAGACGCATGATGAGGAGACCCGGAAGTTCTTCAAGCACTCTTCTGTGTCATGTGTGCTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGTTGTTGGAACGCTTTTCACCCATCACCAAAAGTGCGTGATTGTGGATACACAAGCATCTGGAAATTACCGGAAGATAAGTGCTTTTATTGGAGGACTTGACCTATGCGATGGTCGTTACGATACTCCCGAGCATCGGTTGTTAAAAGATCTTGACACTGTATTTGAGGATGATTATCATAATCCAACTTTTTCCGGAGGTGCAAAGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCTGCAGCATATGACGTGCTTACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCTGAATTAGGTCAGCGGTTCAAAAGAGTATCACATTGGCATGAAGATGCTTTAATAAAGTTGGAACGTATATCTTGGATACTCAGTCCATCTCAGTCAGTCCCTAACGACGATCCATTGTTATGGGTTTCCGAGGAAAATGATCCCAACAATTGGCATGTTCAGGTTTTCCGGTCCATAGATTCAGGATCTTTGAGAGGATTTCCCAAAGATGTTTTTCAAGCCGAGTTGCAGAATCTGGTTTGTGCAAAAAATTTGGTTATTGACAAAAGCATTCAAACAGCATATATTCAAGCTATAAGATCTGCCCAACACTTCATATACATTGAGAATCAGTATTTTCTAGGATCGTCGTTTGCGTGGCCTGCATACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAGTTGGCATTGAAGATTGCTAGTAAGATAAGAGCCAATGAGAGGTTTGCTGTATACATTGTGATACCAATGTGGCCTGAAGGGGCTCCCAGTTCTGTTTCTGTTCAAGAAATATTGTTCTGGCAGGGCCAGACAATCCAAATGATGTATGAAATCATTGGACGCGAGTTGAAATATAAGAATCTCGAGAACGCTCATCCCTCAGACTACTTGAACTTTTACTGTCTCGGCAATAGGGAACCGCACAACGACTTATCATGCTCCTCTACTCATTCTCTCAAGAGTGAAGATTTGACTTCAGACTCGCAAAAGTTCCGAAGATTCATGATATACGTGCATGCGAAAGGAATGATTGTCGACGACGAGTATGTAATAGTAGGGTCTGCTAACATAAATCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGTGCATATCAACCCAGTAACACATGGGTTAAGAGGAAACGACATCCACGAGGCCAGGTTTATGGCTATAGAATGTCGCTGTGGGCCGAACATTTAGGAAACATCGACAGTTGCTTCAAGGAGCCAGAAAGTTTGGCTTGTGTGAAAGCAGTGAACAAGATAGCTGAAGATAACTGGAAGAAATACACAGCAGAGGAGTTTAAGCCATTGCAAGGACACCTCCTGAAGTACCCGATTGATGTGAGCCAAAGTGGGAGGGTTGGGCCGTTGAGTGGACACGAGACATTCCCTGACTTCGGTGGTAAGGTCCTTGGGGCTCGATCTAACCTCCCTGATGCTCTTACTACATAA 2541 45.38 MNGNDAEPLVYVHGDLDLKIIEARRLPNMDLLTERIRRFFTVFTSCRKPFSKNDEDEHKRHRKIITSDPYVTVCLAGATVARTRVISNSQNPIWNEHFKISLAHPVSQVEFHVKDNDVFGADLIGIATVPARRVLSGEVIDDWFPIIGSFGKPPKPDSAVRLEMKFTKCEDNPLYRQGIAADPEHFGVRNCYFPVRHGGSVTLYQDAHVPDNMLEEIELEKGNLYQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGDLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNYRKISAFIGGLDLCDGRYDTPEHRLLKDLDTVFEDDYHNPTFSGGAKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSEENDPNNWHVQVFRSIDSGSLRGFPKDVFQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPAYKEAGADNLIPMELALKIASKIRANERFAVYIVIPMWPEGAPSSVSVQEILFWQGQTIQMMYEIIGRELKYKNLENAHPSDYLNFYCLGNREPHNDLSCSSTHSLKSEDLTSDSQKFRRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGSRDTEIAMGAYQPSNTWVKRKRHPRGQVYGYRMSLWAEHLGNIDSCFKEPESLACVKAVNKIAEDNWKKYTAEEFKPLQGHLLKYPIDVSQSGRVGPLSGHETFPDFGGKVLGARSNLPDALTT 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1463539 1468911 + CmoCh05G003310.1 Cmo05g00331 382466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00331 846 Gene3D Endonuclease Chain A 214 467 - -
Cmo05g00331 846 PIRSF PLD_plant 1 846 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cmo05g00331 846 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 692 719 IPR001736 GO:0003824
Cmo05g00331 846 Gene3D Endonuclease Chain A 521 739 - -
Cmo05g00331 846 PANTHER PHOSPHOLIPASE D 8 845 IPR015679 -
Cmo05g00331 846 SUPERFAMILY Phospholipase D/nuclease 538 775 - -
Cmo05g00331 846 Gene3D C2 domain 12 175 IPR035892 -
Cmo05g00331 846 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 168 IPR035892 -
Cmo05g00331 846 SMART pld_4 692 719 IPR001736 GO:0003824
Cmo05g00331 846 SMART pld_4 349 384 IPR001736 GO:0003824
Cmo05g00331 846 Pfam PLD-like domain 546 728 IPR025202 -
Cmo05g00331 846 CDD C2_plant_PLD 10 167 - -
Cmo05g00331 846 PANTHER PHOSPHOLIPASE D 8 845 - -
Cmo05g00331 846 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 349 384 IPR001736 GO:0003824
Cmo05g00331 846 SUPERFAMILY Phospholipase D/nuclease 214 455 - -
Cmo05g00331 846 SMART C2_3c 15 143 IPR000008 -
Cmo05g00331 846 Pfam Phospholipase D C terminal 766 836 IPR024632 -
Cmo05g00331 846 Pfam Phospholipase D Active site motif 350 384 IPR001736 GO:0003824
Cmo05g00331 846 ProSiteProfiles C2 domain profile. 1 144 IPR000008 -
Cmo05g00331 846 Pfam C2 domain 14 146 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00677 Cmo-Chr3:5991150 Cmo05g00331 Cmo-Chr5:1463539 0 dispersed
Cmo05g00331 Cmo-Chr5:1463539 Cmo08g00909 Cmo-Chr8:5910019 0 dispersed
Cmo01g00146 Cmo-Chr1:632664 Cmo05g00331 Cmo-Chr5:1463539 0 transposed
Cmo05g00384 Cmo-Chr5:1728849 Cmo05g00331 Cmo-Chr5:1463539 0 transposed
Cmo01g00070 Cmo-Chr1:288813 Cmo05g00331 Cmo-Chr5:1463539 1.26E-178 transposed
Cmo05g00331 Cmo-Chr5:1463539 Cmo07g00397 Cmo-Chr7:1805774 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00331 K01115 - csv:101213442 1659.43