Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00340 ATGGCTTCGAAGCTTTGTGATTCGTGTAAGTCCGCCACCGCTACTCTCTTCTGCCGAGCCGACTCTGCCTTCCTTTGCCTTGGCTGTGATTCCGAAGTTCACGCAGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGCTTTGTGAAGTCTGTGAGCAAGCTCCTGCTCATGTTACCTGCAAGGCCGATGCCGCTGCTCTCTGCCTCGCTTGTGACCACGATATTCATTCTGCTAATCCCCTCGCACGCCGTCACGAGCGAGTTCCGGTCACGCCGTTCTACGACACCTCCAACTCCGAGAACTCCCTCGCTGTCAAGCCTGGCGCTGCAATCAACTTCCTCGACGACCGCTACTTCTCCGATGTCGATGCCGATGCCGCTGATGTCAGTAGAGAAGAGGCCGAGGCTGCTTCTTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTCCAGATTTTAACTCGGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGTCATGTGGATCCGAAATTGGAAGCGCAAGAGCAGAACAGCTCTGGTGCCGATGGAGTTGTTCCTGATCAGACCAAAGGCGTCCATCTCGCATCAGTTAACGATCGCTGCTTCAACATAGACTTCCCCGGCGCCAAATCGTTCCCGTACGGTTTCAATCCTCAGTCAATCAGTCACAGTGTATCATCTTCGTCAGTCGAGGTTGGAGTCGTGCCAGACGGTAGCGCAATGACGGATGTATCAAATCCGTACACAAAACCGTCGACGGAATCGTCGATTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATTCGATACGCATCTCGTAAGGCGTACGCCGAGACGCGACCTCGAATCAAAGGACGGTTCGCCAAAAGGACGGACATCGAACTCGAGGTTGACCGAGTGAGTGGATACGGCGTCGTTCCGTCATTCTAA 1014 53.65 MASKLCDSCKSATATLFCRADSAFLCLGCDSEVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCLACDHDIHSANPLARRHERVPVTPFYDTSNSENSLAVKPGAAINFLDDRYFSDVDADAADVSREEAEAASWLLPNPNPKAIESPDFNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPDQTKGVHLASVNDRCFNIDFPGAKSFPYGFNPQSISHSVSSSSVEVGVVPDGSAMTDVSNPYTKPSTESSIQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1519922 1521739 + CmoCh05G003400.1 Cmo05g00340 382475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00340 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Cmo05g00340 337 SMART bboxneu5 1 48 IPR000315 GO:0008270
Cmo05g00340 337 SMART bboxneu5 49 91 IPR000315 GO:0008270
Cmo05g00340 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 337 IPR045281 GO:0009909
Cmo05g00340 337 CDD Bbox1_BBX-like 5 48 - -
Cmo05g00340 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Cmo05g00340 337 Pfam CCT motif 276 318 IPR010402 GO:0005515
Cmo05g00340 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Cmo05g00340 337 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Cmo05g00340 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Cmo05g00340 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 337 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00340 Cmo12g00329 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00340 Cmo-Chr5:1519922 Cmo11g00414 Cmo-Chr11:2033089 3.59E-112 dispersed
Cmo12g00329 Cmo-Chr12:2050764 Cmo05g00340 Cmo-Chr5:1519922 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9803 PF00643 zf-B_box 5.30E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00340 - - csv:101208063 611.298