Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00348 ATGAAGTGTAGAAATTTGTCTCGTCTTATCTGCCCCGCGTATGATCCCGGGGTTTCTGTGATACACGAATCCATACTTCCCTGTGTGCATCTGTGTCTAAAGGAAATTGATGCAAACATGAGTTCATTTTCCATCACTCGGAAAAAGACTCCTTTCCAAAAGCACAGAGAGGAGGAAGAGGCAAAGAAGAAGAGAGAGGAGGATGAAACTGCTCGATTGTATGCGGAATTTGTGGAGTCATTTCAAGGAGATAATGCACCTGGGTCCAAGACTTTTGTTCGTGGAGGAACTATCAACCCCAACGAGAAATTGAAGAGTGAATCTGAGGGTGAAAAGGCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGATATGTGCCATCTTTCATTCCACCTCCATTGGCATCCAAGGGAAAAGAATCTGACAAGAAGGAGCTGGACAAGCCAAAGGAGAAAGAAAAGGGGAAGTCTAGGAACATCGATCATTTTATGGAGGAGCTGAAGCATGAGCAAGAGATGAGGGAAAGACGAAATCAGGATCGCGAACATTGGCGTGAAGGACGCCTTGGAGAAAACTTAACACCATCTAGTCGTTTTGATGAACTGCCGGATGACTTTGATCCTAGTGGAAAGTTCCCTGGATCATTTGATGATGGAGATCCTCAAACAACTAACCTTTATGTAGGAAATTTATCTCCTCAGGTTGATGAGAATTTTCTCCTTCGAACTTTTGGAAGATTTGGACCAATTGCTAGTGTGAAGATAATGTGGCCAAGGACAGAGGAGGAGCGAAGACGGCAAAGAAATTGTGGATTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAAGGAGTTGTTGTTTATGGGTATGAACTGAAAATCGGATGGGGAAAGTCTGTCGCTCTTCCATCCCAAGCATTACCTGCGCCTCCTCCAGGTCATATGGCCATTAGAAGTAAGGAGGGTGGCACTGTTATCTTATCTGGCTCATCAGGACCGCCAGTTACTTCTGTCCCAAACCAAAATTCTGAGCTGGTTCTAACACCCAACATTCCTGATATTACTGTCGAACCACCTGAGGAGGATCATCTCCGCCATGTCATTGACACTATGGCTCTATATGTTCTGGATGGAGGTTGTGTCTTTGAACAAGCTATTATGGAGAGGGGTCGGGGTAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAAAAGAACATACATACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACTGGTAGTGGAAGATGGGTTCCACCGCCTCTTCCAACTGCTAAAAGCCCAGAGCTTGAGGAGTCTGGTCCCACATATGCTGCTGGAAGAACCAGACGCGTGGAGCTTGAAAGAACATTGACTGATTCACAAAGGGATGAGTTTGAGGACATGCTTCGGGCACTGACACTAGAAAGGAGTCAGATAAAGGAAGCAATGGGGTTCGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTCTAACAGAATCTTTAACGCTTAGAGAAACTCCTATTCCAACCAAAGTTGCTAGGTTGATGCTTGTGTCTGATATCCTTCATAACAGTAGTGCTCCCGTTAAGAATGCATCTGCATACCGTACTAAATTTGAAGCAACATTACCTGACATCATGGAGAGCTTCAATGATCTATATCGTGGCATAACAGGGAGAATTACGGCAGAGGCCCTCAAGGAACGAGTGCTGAAATTATTGCAAGTATGGTCAGATTGGTTTCTGTTCTCAGATGCTTATGTGAATGGATTGCGAGCCACGTTCCTTCGCTTAGGAAACTCTGGTGTGACCTCCTTTCATTCATTATGTGGCGATGCCCCAGAGATTGAACGGCAGGCCAATTGTGAAGAGTTAGGAGATGGGAGCAAAATCAATCAAGATGCTGAATTGGCAATGGGCAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTCGGAGAATTGGAAAGAAGGTGTAGGCATAATGGGTTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTGCTAAGTCTTGAAGAGGCAGAAAAACAGAGTGGATATGAACTTGATGAAGACTTAAAATATAGTAATTCTCGTACTGTAAGATATTCAAGTAGTTCAAAGGAAACTAAGGTTGAACGAAATCCAGCCGAAATTTCTGGTTGGAACCATTTTGGAGACGACGAGGCAAATTTCCAGAGGATGGGTTCTGTACCTATGGCTCAAACTCTTTCAATTCCACAGCCTGAACTAAAAAGTTTCACCAAGTCTGGGAAAAATGATCCCGTTTTGCCGGCCTCTAAATGGGCTAGGGAGGACGATGAAAGTGACAATGAGCAAAAAGGAGGTCCTAGGGGTCTCGGGTTGAGCTATTCATCTTCAGGAAGTGAAAATGCAGGAGATGGTCTCAGTAAATCTGATGAGATGGAGATTACTACGGAAGCAAGTGTCCTTATGCAGCCTGATAGTGGGTTGAATGAAGAGCAGAGACAAAAGTTAAGGCGTGTTGAGGTGGCTTTGATAGAATATCGTGAATCTTTGGAGGAACGAGGCATCAAAAGTGTAGAGGAAATAGAGAGGAGAGTTTTGATTTATCGAAAACAACTAGAATCTGAATATGGACTGTCAGATTCCAATGAGGCTGCATCAAGGAAGAAGAGGAGGGATAGAGCAGATGATAGCCATGATTCATCAAGGAAGCTGCAGCGTAGCCAGAGCCATAGCGATAGCCCAGTACGAAAGCCATCCAACCAAGATAGGGACAGAGAAAATGACATTGACAGGGAGCGAGAAAGATCACGAGACAGGGACCGCGAAAAGAGTGGAAGCAGAGAAAGGGATGACCACGACCGAGATAGAGGTAAAGAAAGAGATAGGGATAGAAGAAGACGAGCAAAATGA 2991 44.4 MKCRNLSRLICPAYDPGVSVIHESILPCVHLCLKEIDANMSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKLKSESEGEKAKDGVSVPKKGSRYVPSFIPPPLASKGKESDKKELDKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQDREHWREGRLGENLTPSSRFDELPDDFDPSGKFPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYGYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSSGPPVTSVPNQNSELVLTPNIPDITVEPPEEDHLRHVIDTMALYVLDGGCVFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEESGPTYAAGRTRRVELERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRGITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRLGNSGVTSFHSLCGDAPEIERQANCEELGDGSKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEAEKQSGYELDEDLKYSNSRTVRYSSSSKETKVERNPAEISGWNHFGDDEANFQRMGSVPMAQTLSIPQPELKSFTKSGKNDPVLPASKWAREDDESDNEQKGGPRGLGLSYSSSGSENAGDGLSKSDEMEITTEASVLMQPDSGLNEEQRQKLRRVEVALIEYRESLEERGIKSVEEIERRVLIYRKQLESEYGLSDSNEAASRKKRRDRADDSHDSSRKLQRSQSHSDSPVRKPSNQDRDRENDIDRERERSRDRDREKSGSRERDDHDRDRGKERDRDRRRRAK 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1552103 1566959 - CmoCh05G003480.1 Cmo05g00348 382483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00348 996 SUPERFAMILY Surp module (SWAP domain) 348 429 IPR035967 GO:0003723|GO:0006396
Cmo05g00348 996 PANTHER - 41 991 - -
Cmo05g00348 996 MobiDBLite consensus disorder prediction 817 831 - -
Cmo05g00348 996 Coils Coil 56 76 - -
Cmo05g00348 996 MobiDBLite consensus disorder prediction 896 996 - -
Cmo05g00348 996 ProSiteProfiles SURP motif repeat profile. 374 417 IPR000061 GO:0003723|GO:0006396
Cmo05g00348 996 SMART cwf21_2 855 904 IPR013170 -
Cmo05g00348 996 SMART surpneu2 372 426 IPR000061 GO:0003723|GO:0006396
Cmo05g00348 996 Pfam CID domain 488 616 IPR006569 -
Cmo05g00348 996 SMART rrm1_1 226 302 IPR000504 GO:0003723
Cmo05g00348 996 SUPERFAMILY RNA-binding domain, RBD 218 316 IPR035979 GO:0003676
Cmo05g00348 996 PANTHER RNA PROCESSING PROTEIN LD23810P 41 991 - -
Cmo05g00348 996 MobiDBLite consensus disorder prediction 85 201 - -
Cmo05g00348 996 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 300 IPR000504 GO:0003723
Cmo05g00348 996 Gene3D Surp module 360 429 IPR035967 GO:0003723|GO:0006396
Cmo05g00348 996 ProSiteProfiles CID domain profile. 481 626 IPR006569 -
Cmo05g00348 996 Coils Coil 856 876 - -
Cmo05g00348 996 MobiDBLite consensus disorder prediction 781 861 - -
Cmo05g00348 996 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 306 IPR000504 GO:0003723
Cmo05g00348 996 MobiDBLite consensus disorder prediction 839 856 - -
Cmo05g00348 996 CDD RRM_SR140 224 307 IPR035009 -
Cmo05g00348 996 MobiDBLite consensus disorder prediction 909 989 - -
Cmo05g00348 996 Gene3D - 482 626 IPR008942 -
Cmo05g00348 996 MobiDBLite consensus disorder prediction 138 190 - -
Cmo05g00348 996 MobiDBLite consensus disorder prediction 796 811 - -
Cmo05g00348 996 Pfam Surp module 372 424 IPR000061 GO:0003723|GO:0006396
Cmo05g00348 996 SMART 558neu5 488 623 IPR006569 -
Cmo05g00348 996 MobiDBLite consensus disorder prediction 104 119 - -
Cmo05g00348 996 Pfam cwf21 domain 856 902 IPR013170 -
Cmo05g00348 996 Coils Coil 486 506 - -
Cmo05g00348 996 MobiDBLite consensus disorder prediction 729 755 - -
Cmo05g00348 996 SUPERFAMILY ENTH/VHS domain 483 622 IPR008942 -
Cmo05g00348 996 Gene3D - 855 906 - -
Cmo05g00348 996 Gene3D - 136 308 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00348 K12842 SR140; U2-associated protein SR140 - csv:101209274 1648.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00348 Cmo12g00321 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00348 Cmo-Chr5:1552103 Cmo01g01919 Cmo-Chr1:13740073 2.74E-09 dispersed
Cmo12g00321 Cmo-Chr12:1995773 Cmo05g00348 Cmo-Chr5:1552103 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00348 Cmo_Chr05 FPKM 4.248571 3.32966 3.153391 3.832097 36.48888 36.726139 39.649635 0.068008 0.0 0.085436