Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00354 ATGTCGGACGAAGAGCATCAATTCGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAGGCCGGAACCATCCGCAAGAATGGTTACCTTGTCATCAAGGGCCGTCCCTGTAAGGTAGTTGAGGTTTCTACGTCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTGGCAATTGATATATTCACCACCAAAAAACTTGAAGATATTGTCCCATCTTCCCACAACTGTGATGTTCCTGAGGTTACTCGTACAGATTATCAGCTTATCGACATCTCTGAAGATGGATTTGTGAGCCTCTTGACTGACAACGGAAGCACAAAGGATGATTTGAGGCTTCCTACGGATGATAGTTTACTTACTCAGATTAAAGATGGGTTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAGTTAA 483 46.38 MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1586049 1588330 - CmoCh05G003540.1 Cmo05g00354 382489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00354 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo05g00354 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 152 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo05g00354 160 CDD S1_eIF5A 86 156 - -
Cmo05g00354 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo05g00354 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo05g00354 160 MobiDBLite consensus disorder prediction 1 21 - -
Cmo05g00354 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo05g00354 160 Gene3D - 86 159 IPR012340 -
Cmo05g00354 160 Gene3D - 1 85 IPR014722 -
Cmo05g00354 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Cmo05g00354 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo05g00354 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cmo05g00354 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00354 Cmo09g00416 CCT
Cmo01g01713 Cmo05g00354 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01767 Cmo-Chr4:8915488 Cmo05g00354 Cmo-Chr5:1586049 3.92E-105 dispersed
Cmo05g00354 Cmo-Chr5:1586049 Cmo18g01144 Cmo-Chr18:11697801 2.34E-108 dispersed
Cmo05g00354 Cmo-Chr5:1586049 Cmo09g00416 Cmo-Chr9:1817752 3.95E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00354 K03263 K02180 csv:101211156 315.079