Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00357 ATGGCGTCTTCTGACAAGGATGTCGAAGAACAGCTTTTGGAAGCTGGCGATAAGATTGTTGACCCTCCTACTTCAGTTGAAGAACTTCTACCTCTTCTCGACAGTGCGCTCACTCCATCACTGAAAGCCCTGATTTCTGATCAACTTCTAAGACATTCGGATATTGATGTCAAAGTTGCAGTTGCTGCATGCATTAGTGAAATAACTAGGATCACTGCACCTGATGCCCCTTACAATGATGAGCAAATGAAGGAGGTATTTCATCTTATAGTATCATCCTTTGAAAATCTCTCTGACAAGTCTAGTCGATCATATGCAAAGAGGGCATCCATTCTTGAAACCGTTGCAAAGGTCAGATCATGTGTGGTCATGCTGGATTTGGAATGTGATGGATTGATCATTGAGATGTTCCAACATTTCCTTAAGACAGTAAGAGATTATCACCCAGAGAATGTATTTTCGTCAATGGAGACAATTATGAGCCTTGTCTTAGAAGAAAGTGAAGACATAGCTGTAGATCTCCTCTCACCGATCTTAGAAAGTGTGAAGAAGGACAATGAGGAAATTCTACCTATTGCTCGGAAGTTAGGAGAGAGAGTTCTTGATAACTGTTCTACCAAGCTCAAACCTTATTTGGTTCAAGCTGTAAAAAGCTTAGGAATTTGTTTTGATGATTATAGTGATATTATTGCTTCCATATGCAAAGATCTTTCTGGCTCTCTTGAGCCAAGCAATCTTAACGATGCTGGTGAAAACGTGGTTGCTGAGAGCCAGTGCGTTAGAACGTCTGGGGATGAGGTTGAAGAAAACCAGACAGAAGTGGCCACACCTGAGAGAGTTGACTTGGCCGTTGAGAAACATCATGACTCAGTTAAGAGCAATGGAGCTGCACAGGGGGGTGAAGATGTCTCTGTCTCTAGTTTGGTGCACAAGAAGGAAGAACATGGTGGTCAGGAGTGCAAAGAGGTGAAATCACCCAAAAATCCTGAACCTGCTAATTTGGGATCTGAGAAGGCTAGCAATGTGAAGGAAAGATCTGAAAAGATCCCTAAGAAAAGAGGCAGAAAACCTAAACAATCCGCAAAATCTACAGCAGTTCCTCATGTTGATGCTCCGAAGGAATCTGAGAATCAACCAGAACATGAAAGCCGTAGTGACCATCCTAGTTCTCCTCGGGGGGACCGGACTGCTGAAAACTTGCCTTCAGAAAATGCGGTTGATGCCAAGCCTTCTTCACCCAAGGCTATGGAGATTGAATCAGCACACATTGCTTCATCTTCACTTAGTGGAAGCGTTCCCAGTGAGTGTAACAATAAGTCTGTACAGGCAAAAAAGAAGGGAAACCCAGCTAAAGTGGTGGTGGCATCATCTGCAGAAGTTTCAAAAAAAGCATCTGATGGAATGAATAAGTCAGGAGCAAAGATCGTTTCACACGGTGAAGAGAAGGCTCCAGCTGGAGCTTCTGATGATACTAAGACTGCAGCTGAAGATGCAGCAGAAAGGGAAAGTGATACTGCTAGTGATTCTGAAGTTAAGACGTTGAAACAGTCCGCTAGGAAGGGAGGTGGAGCCAGTAAGAGTAGTGGTGAATCTTTAAAACAATCGGAGGCTAAGAGAAAGAAGGGATTGGGGAAATCTATTTCTGGAAAAACCATTAAAAATTTGTCAGATGATGATGATAAAAAGGAAGCAACACCTGTGCTGAAACCAACCTCAAAAACCACCAAAGATGAGAAGATCTTGGACAAGACTACAACACCAGCTTCCAAGAGGAAACGAACTCCGAGCAAAGAAAAAGAGTCTGAAACCAAGGATTTTGATGAATCTTTGGTTGGTTCAAAGATAAAAGTGTGGTGGCCAAAGGATCGCATGTTTTATGCAGGTGTAGTCGAATCTTTTGATCCTGGAAAAAGGAAGCACAAGGTTTTGTACACGGATGGAGATGAAGAAATACTAAATCTTAAAAAGGAGAGATGGGAATATATTGACGACGACTCTGGATCTGAACGGGAGGAAACAGCAGATCTAGTGAGATCAGAATCTGCAGCAGAGACACCTCAAAAGAAAAAGGCGAAACTAAATGCCAACGAGGCTGCTAAGCGAGGAAAGATGGACGTCTCACCGAAAAAGGGTGGAGCGACTTCCTCCGGCAAATCCAAAGGTGTAGCTACAAAAACTAATCAGAGTAGTGGCAGCAAAGTTGAAGGCAAGTCGAAAGAGAATACCCCTAAGGTTGGAAGACCTGCAAATGTAAGCAAATCCAAGGATCAAACCACTCCTAAAACTGTCGGCAAAGCTGGTAGCACAGGACCGAAAATTGTTGGCAAGTCGAAGAACGACGATGCTGAATCACACAAGAGTAGCAAATTGAAGGATAATGAGATAACTACACCTACTGTTGTTGCAAAGTCCAAGCAAGACGTGTTGAAGACAGGGAAGTCCAAACAAGAGACTCCAAAAACTCCTGCAATTTCAAAGGGAAAGTCTACTACCAAAACAGGCGATAAATCTAATAGTGCCAATCTCTCCCCCAAGGTTAAGTTCACATCTTCAAAATCAAAAGAAAGTGGAGATTTGAAGAACTCAGCTGCTCTTGGGAAAACAATGGAGAATTCAAAGGGAAAGTCACTAACTTCATCCAATGATCAGGGCAGTGAATCTAAGCCAGGAAAGAAAAGAAGAATAGAGTCAAAAGGTTGA 2700 42.74 MASSDKDVEEQLLEAGDKIVDPPTSVEELLPLLDSALTPSLKALISDQLLRHSDIDVKVAVAACISEITRITAPDAPYNDEQMKEVFHLIVSSFENLSDKSSRSYAKRASILETVAKVRSCVVMLDLECDGLIIEMFQHFLKTVRDYHPENVFSSMETIMSLVLEESEDIAVDLLSPILESVKKDNEEILPIARKLGERVLDNCSTKLKPYLVQAVKSLGICFDDYSDIIASICKDLSGSLEPSNLNDAGENVVAESQCVRTSGDEVEENQTEVATPERVDLAVEKHHDSVKSNGAAQGGEDVSVSSLVHKKEEHGGQECKEVKSPKNPEPANLGSEKASNVKERSEKIPKKRGRKPKQSAKSTAVPHVDAPKESENQPEHESRSDHPSSPRGDRTAENLPSENAVDAKPSSPKAMEIESAHIASSSLSGSVPSECNNKSVQAKKKGNPAKVVVASSAEVSKKASDGMNKSGAKIVSHGEEKAPAGASDDTKTAAEDAAERESDTASDSEVKTLKQSARKGGGASKSSGESLKQSEAKRKKGLGKSISGKTIKNLSDDDDKKEATPVLKPTSKTTKDEKILDKTTTPASKRKRTPSKEKESETKDFDESLVGSKIKVWWPKDRMFYAGVVESFDPGKRKHKVLYTDGDEEILNLKKERWEYIDDDSGSEREETADLVRSESAAETPQKKKAKLNANEAAKRGKMDVSPKKGGATSSGKSKGVATKTNQSSGSKVEGKSKENTPKVGRPANVSKSKDQTTPKTVGKAGSTGPKIVGKSKNDDAESHKSSKLKDNEITTPTVVAKSKQDVLKTGKSKQETPKTPAISKGKSTTKTGDKSNSANLSPKVKFTSSKSKESGDLKNSAALGKTMENSKGKSLTSSNDQGSESKPGKKRRIESKG 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1604991 1615982 - CmoCh05G003570.1 Cmo05g00357 382492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00357 899 SUPERFAMILY Tudor/PWWP/MBT 609 651 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 776 792 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 712 736 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 311 326 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 373 393 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 662 707 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 662 899 - -
Cmo05g00357 899 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 2 855 IPR039776 GO:0007064
Cmo05g00357 899 PANTHER TRANSCRIPTIONAL REGULATOR 2 855 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 483 515 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 815 858 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 552 607 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 262 280 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 865 885 - -
Cmo05g00357 899 Pfam Sister chromatid cohesion protein PDS5 protein 35 214 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 422 444 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 745 765 - -
Cmo05g00357 899 SUPERFAMILY ARM repeat 28 248 IPR016024 -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 311 607 - -
Cmo05g00357 899 MobiDBLite consensus disorder prediction 261 280 - -
Cmo05g00357 899 Gene3D - 596 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00357 - - - csv:101205018 1323.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00357 Cmo12g00620 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00357 Cmo-Chr5:1604991 Cmo17g00864 Cmo-Chr17:7934681 3.26E-88 dispersed
Cmo14g00429 Cmo-Chr14:2034877 Cmo05g00357 Cmo-Chr5:1604991 3.97E-07 dispersed
Cmo12g00316 Cmo-Chr12:1948914 Cmo05g00357 Cmo-Chr5:1604991 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g89 . . . . . . . . Cmo05g00357 Cmo12g00620 . . . Car12g00661 . . Cpe07g00594 Bhi04g00092 . . . Hepe10g0189 . Lcy13g1876 Cla08g00938 Cam08g1385 Cec08g0966 Cco08g1088 Clacu08g1092 . Cre08g0875 . . Cone17ag1457 Cone20ag0020 . . . Cme03g01550 Blo17g00906 . . . . . . . . . . Cma12g00683 Cma05g00353 Car05g00298 . Cpe11g00783 . . . . . . . . . . . . . . . Lsi08g00780 . Chy03g01060 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002456 2 4 2 1 1 1 2 1 1 1 1 1 2 1 2 2 1 4 2 1 1 2 2 2 2 3 1 3 1 4 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00357 Cmo_Chr05 FPKM 1.944581 0.887553 5.362945 3.852803 1.771073 0.555655 1.969274 0.0 0.0 0.0