Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00361 ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGGCATTGGGGCTCATGGGTGTCCGAGATTCGTCACCCTTTACTGAAAACCAGAATTTGGCTGGGCACGTTCGAAACGGCTGAGGACGCTGCCAGAGCCTACGATGAAGCTGCTCGCCTAATGTGCGGTCCTCGTGCCAGAACCAATTTCCCTTTCAACGCAAATGACTCCAATTCCTCTTCTTCTAAGCTCCTCTCTGCTAATTTGACCGCCAAACTCCACCGCTGCTACATGGCGTCGCTTCATTTGACCAACCCATTGCCGCAGAAACCCGCCGAGAAGAAAAGGGCGGTGAAAATGACACAAATGGAGACTGCCCATCAGCCGTTTGTGGCTCTGGAAGAGGACCACATTGAACAGATGATCGAGGAGTTGATTCATTATGGGTCTGTTGAGCTCTGCTCTGTTGTACCGCCGCCGCCGCCGCCGCCTCAGCCGTTTTGA 483 53.83 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSANLTAKLHRCYMASLHLTNPLPQKPAEKKRAVKMTQMETAHQPFVALEEDHIEQMIEELIHYGSVELCSVVPPPPPPPQPF 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1637315 1637932 - CmoCh05G003610.1 Cmo05g00361 382496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00361 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 112 149 - -
Cmo05g00361 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 103 - -
Cmo05g00361 160 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 112 149 - -
Cmo05g00361 160 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 103 - -
Cmo05g00361 160 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cmo05g00361 160 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cmo05g00361 160 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cmo05g00361 160 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cmo05g00361 160 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cmo05g00361 160 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cmo05g00361 160 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cmo05g00361 160 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01535 Cmo05g00361 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01535 Cmo-Chr1:11839451 Cmo05g00361 Cmo-Chr5:1637315 3.87E-62 dispersed
Cmo05g00361 Cmo-Chr5:1637315 Cmo17g00858 Cmo-Chr17:7913388 4.92E-58 dispersed
Cmo05g00361 Cmo-Chr5:1637315 Cmo05g00362 Cmo-Chr5:1640781 4.57E-62 tandem
Cmo12g00308 Cmo-Chr12:1914204 Cmo05g00361 Cmo-Chr5:1637315 2.11E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9806 PF00847 AP2 5.80E-12 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00361 - - cpep:111805765 273.478