Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00362 ATGCCCAGACCACAACAAAGATTCCGCGGCGTCCGACAGCGCCATTGGGGCTCATGGGTCTCCGAAATTCGCCATCCTTTATTGAAGACTAGAATTTGGTTGGGCACGTTCGAGACGGCCGAAGACGCAGCGCGCGCATACGACGAGGCCGCGCGCCTCATGTGCGGGCCGAGGGCGCGCACTAACTTCCCTTACGACGCCTCTCTGTCCCGCTCCTCATCTTCCCGCCTTCTCTCGGCTACTCTAACCGCCAAGCTTCACCGCTGCTACATGGCGTCCTTGCAACTCACCAAGCAATCCTCCTCTGCCGCACGTCGCCCTCAAACCGACACAATCCGAACCGATTTTTCCGTGACATCCGGCATTGCTCCCGTCGGTGTGGAAACCGACGTGACGTCAACGAAGAAAGTCAAACTAGAGAGCGTGGATCGCGGTGAGCCGTTGGATGATGATCATATTCAGCAGATGATCGATGAGCTGCTTGATTACGGCGGAATTGAGCTCCGTTCCGCCGCCGGACTGCAGGCTCAGCCCATTTGA 540 57.96 MPRPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYDASLSRSSSSRLLSATLTAKLHRCYMASLQLTKQSSSAARRPQTDTIRTDFSVTSGIAPVGVETDVTSTKKVKLESVDRGEPLDDDHIQQMIDELLDYGGIELRSAAGLQAQPI 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1640781 1641779 - CmoCh05G003620.1 Cmo05g00362 382497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00362 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 172 - -
Cmo05g00362 179 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cmo05g00362 179 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cmo05g00362 179 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cmo05g00362 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 172 - -
Cmo05g00362 179 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Cmo05g00362 179 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cmo05g00362 179 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cmo05g00362 179 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cmo05g00362 179 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00179 Cmo-Chr1:785316 Cmo05g00362 Cmo-Chr5:1640781 3.27E-48 dispersed
Cmo05g00362 Cmo-Chr5:1640781 Cmo12g00308 Cmo-Chr12:1914204 3.77E-64 dispersed
Cmo05g00361 Cmo-Chr5:1637315 Cmo05g00362 Cmo-Chr5:1640781 4.57E-62 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9807 PF00847 AP2 1.90E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00362 - - cmax:111491817 328.946