Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00368 ATGGGGATGGCAGAGATAAGAGGATTCCTACCAATCTCCGCCCTTACAAAGCAAGGTGGAACCAAACTGCCTTCTCACAATAAGCAGTTTTCCGGGCTGTTTTCATCGTCTGAAAACCGCTTTACCTCTCCTTCTCCGTTCTTGAGGACACGTTTGTACAGTATATCTCTTCGTCTTTCTCTGTCTCCTGCTTCCCCCCACTATGGCTGTATAATTTTTGACTACTTGGAAGTGACGGAATCTGCTTCTTCACCGGCGGTGGTATTTATGGCTTTTCGCAACCAACTCTCTCAGGACCTTCCTCTTCATTATGAGAACCAGTCTCAACCGGAACGGCCGCTTTCTGATAACACGCTGCGCTCGATTTTATCTGATCAACTGACTGACCACTCTCCGGCCGACGATGGTTCTAAGCCTGAACATCCGCTTCAGAGTACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAGCACCTCATTCTCACTTTTCTGATGAGACCACGGCGACAGCTGCGGATAACGTTGACACCGACTTCCTTAATCTTCACACGACTGCTGCCAATTCTGCTGTCTCTCACCCGTCGGGTCAATGGCTCTCCCGCGCGATCCTCCATCGCGATCATAGCGATGTTTTAGATGAAGTCGCCGATGCTGCCGATGCTATGATTGGCGCTACCACTTTGTCGCGCGAATCGGATGATTTGAAAAATAACAGCAGCGGCGGGGGTGGGGAGGGTGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGCGTATGGTGGAGATGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCGGAAATTCTGGCGCATCCTCTTTACGAGCAGCTACTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCAGTGGACCAGTTGCCGAGAGTAGATTCTCAGCTTGCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGTTTGGTCACCGTTCTCAGCCCATAGCCGGTAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTATTACTTTGCTCTTTTAAAGAACAACTCCAGCAACATGTTCGTGTTCATGCCATGGAAGCAGTATATGCCTGCTGGGAAATTGAACAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACTGGTGCTACAATGTCTGATGATGACGAAGACCAGACAGATAGCGATGCTAATTTGTTTGATGGAAGTTTTGAGGGTCATGATGCTATGGGATTTGGTCCTCTTATCCCAACAGATAGTGAGAGATCCCTTATGGAAAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAACGGATACAAAGAGAAAATTTTAGATATCAGGGAGGAGATTTTGCGAAAAAGAAGAGCAGGTAAGCTTCCTGGCGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAATTGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAAGAAACTGGGCTGCAACTGAAGCAGATAAACAACTGGTTTATTAACCAGAGGAAGAGGAATTGGCACACGAATCCTTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGGTATAGCTACTGA 1635 47.95 MGMAEIRGFLPISALTKQGGTKLPSHNKQFSGLFSSSENRFTSPSPFLRTRLYSISLRLSLSPASPHYGCIIFDYLEVTESASSPAVVFMAFRNQLSQDLPLHYENQSQPERPLSDNTLRSILSDQLTDHSPADDGSKPEHPLQSTPNWLNSALLRNQAPHSHFSDETTATAADNVDTDFLNLHTTAANSAVSHPSGQWLSRAILHRDHSDVLDEVADAADAMIGATTLSRESDDLKNNSSGGGGEGVNNSDDVAVESDGNEGAYGGDAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRVDSQLARSQNVAAKYSSFGHRSQPIAGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQTDSDANLFDGSFEGHDAMGFGPLIPTDSERSLMERVRHELKHELKNGYKEKILDIREEILRKRRAGKLPGDTTSVLKAWWQSHSNWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRYSY 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1662445 1666791 + CmoCh05G003680.1 Cmo05g00368 382503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00368 544 MobiDBLite consensus disorder prediction 231 263 - -
Cmo05g00368 544 Gene3D - 463 537 - -
Cmo05g00368 544 MobiDBLite consensus disorder prediction 127 147 - -
Cmo05g00368 544 MobiDBLite consensus disorder prediction 386 407 - -
Cmo05g00368 544 ProSiteProfiles 'Homeobox' domain profile. 464 527 IPR001356 GO:0003677
Cmo05g00368 544 SUPERFAMILY Homeodomain-like 466 530 IPR009057 -
Cmo05g00368 544 MobiDBLite consensus disorder prediction 524 544 - -
Cmo05g00368 544 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 134 542 - -
Cmo05g00368 544 ProSiteProfiles ELK domain profile. 444 464 IPR005539 GO:0003677
Cmo05g00368 544 Pfam KNOX2 domain 337 386 IPR005541 GO:0003677|GO:0005634
Cmo05g00368 544 Pfam KNOX1 domain 279 318 IPR005540 GO:0003677|GO:0005634
Cmo05g00368 544 MobiDBLite consensus disorder prediction 231 247 - -
Cmo05g00368 544 Pfam Homeobox KN domain 484 523 IPR008422 GO:0003677|GO:0006355
Cmo05g00368 544 SMART KNOX2_2 332 387 IPR005541 GO:0003677|GO:0005634
Cmo05g00368 544 CDD homeodomain 467 528 IPR001356 GO:0003677
Cmo05g00368 544 SMART ELK_2 444 465 IPR005539 GO:0003677
Cmo05g00368 544 SMART HOX_1 466 531 IPR001356 GO:0003677
Cmo05g00368 544 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 134 542 - -
Cmo05g00368 544 SMART KNOX1_2 276 320 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01539 Cmo-Chr1:11883239 Cmo05g00368 Cmo-Chr5:1662445 0 dispersed
Cmo05g00368 Cmo-Chr5:1662445 Cmo15g01252 Cmo-Chr15:8604183 7.50E-121 dispersed
Cmo12g00302 Cmo-Chr12:1887315 Cmo05g00368 Cmo-Chr5:1662445 0 wgd
Cmo05g00368 Cmo-Chr5:1662445 Cmo09g00434 Cmo-Chr9:1954115 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9808 PF03791 KNOX2 3.80E-19 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00368 - - csv:101213817 744.577