Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00368 | ATGGGGATGGCAGAGATAAGAGGATTCCTACCAATCTCCGCCCTTACAAAGCAAGGTGGAACCAAACTGCCTTCTCACAATAAGCAGTTTTCCGGGCTGTTTTCATCGTCTGAAAACCGCTTTACCTCTCCTTCTCCGTTCTTGAGGACACGTTTGTACAGTATATCTCTTCGTCTTTCTCTGTCTCCTGCTTCCCCCCACTATGGCTGTATAATTTTTGACTACTTGGAAGTGACGGAATCTGCTTCTTCACCGGCGGTGGTATTTATGGCTTTTCGCAACCAACTCTCTCAGGACCTTCCTCTTCATTATGAGAACCAGTCTCAACCGGAACGGCCGCTTTCTGATAACACGCTGCGCTCGATTTTATCTGATCAACTGACTGACCACTCTCCGGCCGACGATGGTTCTAAGCCTGAACATCCGCTTCAGAGTACTCCGAATTGGCTGAATAGTGCGCTACTTCGGAATCAAGCACCTCATTCTCACTTTTCTGATGAGACCACGGCGACAGCTGCGGATAACGTTGACACCGACTTCCTTAATCTTCACACGACTGCTGCCAATTCTGCTGTCTCTCACCCGTCGGGTCAATGGCTCTCCCGCGCGATCCTCCATCGCGATCATAGCGATGTTTTAGATGAAGTCGCCGATGCTGCCGATGCTATGATTGGCGCTACCACTTTGTCGCGCGAATCGGATGATTTGAAAAATAACAGCAGCGGCGGGGGTGGGGAGGGTGTGAATAACAGCGACGATGTGGCGGTTGAGAGCGATGGTAATGAAGGTGCGTATGGTGGAGATGCGGCGATGAATTGGCAGAATGCGCGGTTTAAGGCGGAAATTCTGGCGCATCCTCTTTACGAGCAGCTACTCTCTGCTCACGTCGCCTGCCTCCGGATCGCAACGCCAGTGGACCAGTTGCCGAGAGTAGATTCTCAGCTTGCTCGGTCTCAGAATGTGGCGGCGAAATACTCGTCGTTTGGTCACCGTTCTCAGCCCATAGCCGGTAATGGAAAAGAGCTTGATCAGTTCATGACGCATTATGTTCTATTACTTTGCTCTTTTAAAGAACAACTCCAGCAACATGTTCGTGTTCATGCCATGGAAGCAGTATATGCCTGCTGGGAAATTGAACAATCTTTGCAAAGCTTGACAGGTGTTTCACCAGGTGAAGGTACTGGTGCTACAATGTCTGATGATGACGAAGACCAGACAGATAGCGATGCTAATTTGTTTGATGGAAGTTTTGAGGGTCATGATGCTATGGGATTTGGTCCTCTTATCCCAACAGATAGTGAGAGATCCCTTATGGAAAGGGTGAGGCACGAATTGAAGCATGAACTAAAGAACGGATACAAAGAGAAAATTTTAGATATCAGGGAGGAGATTTTGCGAAAAAGAAGAGCAGGTAAGCTTCCTGGCGACACCACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAATTGGCCATATCCAACTGAGGAAGATAAAGCAAAGTTGGTTCAAGAAACTGGGCTGCAACTGAAGCAGATAAACAACTGGTTTATTAACCAGAGGAAGAGGAATTGGCACACGAATCCTTCAACCTCAACAACCTTGAAGACTAAACGCAAAAGGTATAGCTACTGA | 1635 | 47.95 | MGMAEIRGFLPISALTKQGGTKLPSHNKQFSGLFSSSENRFTSPSPFLRTRLYSISLRLSLSPASPHYGCIIFDYLEVTESASSPAVVFMAFRNQLSQDLPLHYENQSQPERPLSDNTLRSILSDQLTDHSPADDGSKPEHPLQSTPNWLNSALLRNQAPHSHFSDETTATAADNVDTDFLNLHTTAANSAVSHPSGQWLSRAILHRDHSDVLDEVADAADAMIGATTLSRESDDLKNNSSGGGGEGVNNSDDVAVESDGNEGAYGGDAAMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRVDSQLARSQNVAAKYSSFGHRSQPIAGNGKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDDEDQTDSDANLFDGSFEGHDAMGFGPLIPTDSERSLMERVRHELKHELKNGYKEKILDIREEILRKRRAGKLPGDTTSVLKAWWQSHSNWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHTNPSTSTTLKTKRKRYSY | 544 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1662445 | 1666791 | + | CmoCh05G003680.1 | Cmo05g00368 | 382503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00368 | 544 | MobiDBLite | consensus disorder prediction | 231 | 263 | - | - | |
Cmo05g00368 | 544 | Gene3D | - | 463 | 537 | - | - | |
Cmo05g00368 | 544 | MobiDBLite | consensus disorder prediction | 127 | 147 | - | - | |
Cmo05g00368 | 544 | MobiDBLite | consensus disorder prediction | 386 | 407 | - | - | |
Cmo05g00368 | 544 | ProSiteProfiles | 'Homeobox' domain profile. | 464 | 527 | IPR001356 | GO:0003677 | |
Cmo05g00368 | 544 | SUPERFAMILY | Homeodomain-like | 466 | 530 | IPR009057 | - | |
Cmo05g00368 | 544 | MobiDBLite | consensus disorder prediction | 524 | 544 | - | - | |
Cmo05g00368 | 544 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 134 | 542 | - | - | |
Cmo05g00368 | 544 | ProSiteProfiles | ELK domain profile. | 444 | 464 | IPR005539 | GO:0003677 | |
Cmo05g00368 | 544 | Pfam | KNOX2 domain | 337 | 386 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo05g00368 | 544 | Pfam | KNOX1 domain | 279 | 318 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo05g00368 | 544 | MobiDBLite | consensus disorder prediction | 231 | 247 | - | - | |
Cmo05g00368 | 544 | Pfam | Homeobox KN domain | 484 | 523 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo05g00368 | 544 | SMART | KNOX2_2 | 332 | 387 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo05g00368 | 544 | CDD | homeodomain | 467 | 528 | IPR001356 | GO:0003677 | |
Cmo05g00368 | 544 | SMART | ELK_2 | 444 | 465 | IPR005539 | GO:0003677 | |
Cmo05g00368 | 544 | SMART | HOX_1 | 466 | 531 | IPR001356 | GO:0003677 | |
Cmo05g00368 | 544 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 134 | 542 | - | - | |
Cmo05g00368 | 544 | SMART | KNOX1_2 | 276 | 320 | IPR005540 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01539 | Cmo-Chr1:11883239 | Cmo05g00368 | Cmo-Chr5:1662445 | 0 | dispersed | |
Cmo05g00368 | Cmo-Chr5:1662445 | Cmo15g01252 | Cmo-Chr15:8604183 | 7.50E-121 | dispersed | |
Cmo12g00302 | Cmo-Chr12:1887315 | Cmo05g00368 | Cmo-Chr5:1662445 | 0 | wgd | |
Cmo05g00368 | Cmo-Chr5:1662445 | Cmo09g00434 | Cmo-Chr9:1954115 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9808 | PF03791 | KNOX2 | 3.80E-19 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00368 | - | - | csv:101213817 | 744.577 |