Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00383 ATGGCTAAGATCTTTGGTTTTACTCTCACAGAAAGTGAGGATTTTTTCCCTGGGGCACCAATCTATCCGAACCCCAAGGATACGAGTCTCTTTTTGTCCCTTGATCGTCGTGTGGACGTATATTATCCTCTTCGTAAGAGGTCCAGAGTCAGCGCCCCATTTGTGCCTAGTGAAGAAATACTCAAAAAGAAGGAGGCATCTATTGAAGTTCTTCCAGATGAGTGCCTCTTTGAAATCTTCAGGCGCTTGCCTGATAGAGAGACGAGGAGCCTCTGTGCTTGCGTTTCTAAACGTTGGCTCATGCTTTTAAGCAGCATAAGTGGTAATGAATTCCATAGTTCGAAGCCTAAGAACGAGGCAGAGAACGATGGATGTCTTTCACGAAACTTGGAAGGGAAGAAGGCGACAGATGTAAGACTAGCTTCCATAGCAATAGGAACTGCTAGTTGTGGTGGCTTGGGCAAGCTTTCGATTCGTGGAGGCAATCATGGCTGTGAGGTTACGAACGTTGGCCTTAAGGCTGTTGCCTATGGATGTCCTTCCCTTAAAGCTATTTCTTTGTGGAATCTGTCTTCTATAGGAGATGAAGGTCTGATTGAGATTGCCAAAGGATGTCGACTCCTAGAGAAGCTCGATTTATGTCAATGTCCTGGAATTTCAAACAAATCTTTGCTGGAACTTGCCAAAAACTGCCCGAATCTGACTGATATAACAATAGAATCTTGTGCAAACATTGGCAATGAAAGCCTTCAAGCTATTGGACAATATTGTTCCAATTTGAAGTCTATTTCGATCCGGGACTGCCCCCTTGTTGGGGATCAAGGAATAGTGAGCTTGTTCTCGTCCACCTCGTACACCTTAAGCAAGGTAAAGCTCCAGGGTCTAAATGTCACTGACGTGTCGCTTGCTGTCATTGGACATTACGGCAGGGCAGTTACAGATCTTATGCTTACTGGCCTGACAAATGTTACTGAGAGGGGATTTTGGGCCATGGGCAATGGTCATGGTTTGCAAAAGTTGCAATCATTTACACTCGTGTCTTGCCATGGTGTGACCGACGTCGGGCTACAATCCATTGGGAAGGGATGCCCGAACTTAAGGAAGTTCTGCTTGCGAAAATGTTCGTTCTTGTCCGACAAGGGAATGGTCTCGTTCGCTCAGGCTGCTACCTCCATTGAGAACTTACAATTGGAGGAGTGTCACAGGATAACCCAGTTGGGTTTATTTGGTACCATCTTAAACTGTGGTGCAAAGTTAAAGGCTCTTTCTCTAGTACACTGCTTAGGGATCAAGGATTCGAGCCTGAACTTGCCTTCAGTGTCCTCGTGCAAGTCGCTTCAGTCATTAACCATCTCCAATTGCCCTGGGTTTGGTAATGCAAGCTTATCTCTTCTGAGCAAGCTATGCCCCCAGCTTCAGCATGTGGATTTATCTGGGCTCAATGGCATTACAGATTCTGGGCTACTGCCATTGTTTAAGAACTGTGAAGCAGGATTGGTGAAGGTCAATCTAAGTGGCTGTATGAATTTAACCGACAAAGTGATTACATCCTTGGCCAAGCTTCATGGTTGGACTCTTGAATTGCTCAATCTTGATGGTTGTTTGAAGATAACTGATTCAAGCTTAGTAGCCATTGCAGAGAACTGTCTATTGCTTAATGATCTCGACGTTTCCAAGTGTCGTATCACTGATTTTGGAGTTGCAGCCCTTGCTCAAGCCAACCAATTCAACCTGCAGATCCTTTCTATGTTTGGATGTTCTACCTTAACTGACAAGAGCTTGCTTGCTCTTGTAAAACTGGGCGACTCCCTCCTCGGTTTGAATCTTAAACACTGCAACTCAATCAGCACCACGAGTATCGAGCTGCTTTTGGCTCAGCTCCATCGATGCGACATCCTCTACTGA 1905 45.35 MAKIFGFTLTESEDFFPGAPIYPNPKDTSLFLSLDRRVDVYYPLRKRSRVSAPFVPSEEILKKKEASIEVLPDECLFEIFRRLPDRETRSLCACVSKRWLMLLSSISGNEFHSSKPKNEAENDGCLSRNLEGKKATDVRLASIAIGTASCGGLGKLSIRGGNHGCEVTNVGLKAVAYGCPSLKAISLWNLSSIGDEGLIEIAKGCRLLEKLDLCQCPGISNKSLLELAKNCPNLTDITIESCANIGNESLQAIGQYCSNLKSISIRDCPLVGDQGIVSLFSSTSYTLSKVKLQGLNVTDVSLAVIGHYGRAVTDLMLTGLTNVTERGFWAMGNGHGLQKLQSFTLVSCHGVTDVGLQSIGKGCPNLRKFCLRKCSFLSDKGMVSFAQAATSIENLQLEECHRITQLGLFGTILNCGAKLKALSLVHCLGIKDSSLNLPSVSSCKSLQSLTISNCPGFGNASLSLLSKLCPQLQHVDLSGLNGITDSGLLPLFKNCEAGLVKVNLSGCMNLTDKVITSLAKLHGWTLELLNLDGCLKITDSSLVAIAENCLLLNDLDVSKCRITDFGVAALAQANQFNLQILSMFGCSTLTDKSLLALVKLGDSLLGLNLKHCNSISTTSIELLLAQLHRCDILY 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1722719 1726154 - CmoCh05G003830.1 Cmo05g00383 382518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00383 634 SMART LRR_CC_2 179 204 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 389 414 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 231 256 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 523 548 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 496 521 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 337 362 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 469 494 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 150 178 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 575 600 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 363 388 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 205 230 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 257 282 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 416 441 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 443 468 IPR006553 -
Cmo05g00383 634 SMART LRR_CC_2 549 573 IPR006553 -
Cmo05g00383 634 Gene3D Ribonuclease Inhibitor 62 283 IPR032675 -
Cmo05g00383 634 Gene3D Ribonuclease Inhibitor 284 436 IPR032675 -
Cmo05g00383 634 SUPERFAMILY RNI-like 165 408 - -
Cmo05g00383 634 Pfam Leucine Rich repeat 256 279 IPR001611 GO:0005515
Cmo05g00383 634 Pfam Leucine Rich repeat 469 491 IPR001611 GO:0005515
Cmo05g00383 634 Pfam Leucine Rich repeat 550 571 IPR001611 GO:0005515
Cmo05g00383 634 Pfam F-box-like 69 102 IPR001810 GO:0005515
Cmo05g00383 634 Gene3D Ribonuclease Inhibitor 494 590 IPR032675 -
Cmo05g00383 634 Gene3D Ribonuclease Inhibitor 437 493 IPR032675 -
Cmo05g00383 634 PANTHER - 17 625 - -
Cmo05g00383 634 SUPERFAMILY F-box domain 67 105 IPR036047 GO:0005515
Cmo05g00383 634 PANTHER UNCHARACTERIZED 17 625 - -
Cmo05g00383 634 SUPERFAMILY RNI-like 309 633 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00383 K14515 EBF1_2; EIN3-binding F-box protein - csv:101216639 1138.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00383 Cmo09g00469 CCT
Cmo01g01560 Cmo05g00383 CCT
Cmo05g00383 Cmo09g00469 ECH
Cmo01g01560 Cmo05g00383 ECH
Cmo05g00383 Cmo12g00287 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01560 Cmo-Chr1:11995305 Cmo05g00383 Cmo-Chr5:1722719 0 dispersed
Cmo02g00528 Cmo-Chr2:2985034 Cmo05g00383 Cmo-Chr5:1722719 6.31E-06 dispersed
Cmo05g00383 Cmo-Chr5:1722719 Cmo12g01232 Cmo-Chr12:10988981 0 dispersed
Cmo11g00541 Cmo-Chr11:2639052 Cmo05g00383 Cmo-Chr5:1722719 6.43E-08 dispersed
Cmo10g00584 Cmo-Chr10:2659012 Cmo05g00383 Cmo-Chr5:1722719 0 wgd
Cmo12g00287 Cmo-Chr12:1823603 Cmo05g00383 Cmo-Chr5:1722719 0 wgd
Cmo05g00383 Cmo-Chr5:1722719 Cmo09g00469 Cmo-Chr9:2105356 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012947 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00383 Cmo_Chr05 FPKM 5.03925 4.582833 2.555812 3.439634 4.79574 4.079782 4.615327 2.811606 2.8824 3.112603