Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00384 ATGCCGCGCCTGCTTCATGGGACGCTTCACGCCGATATATATGGAATCGACAAGCTTCGAACTGGATGTCCTGTTTTCTGCGGGAAGGATAAAAGGTCAGCCAAAAAGTTTCTTGCTGGAATGAAGAGATGCCTTCTTTGCCGTCCCGAGATTGTTGGCTCTCAAATGTACGCAACACTCGATCTTGATAAGGCCCGAGTTGGCCGAACGAGAATCGTGGATCAGCCATACAGTCCTCAATGGAACGATCATTTTCGTATATACTGTGCTCATACACTGTCACATGTTATATTCACAATAAAAGATGGAGGTGTAGTTGGTGCAACATTACTTGGAAGAGCTTATGTGCCTGTTGAGGATATCATTAAGGGATATGTATATGAGAGATGGGTTGAAATATTAGATGAAGACCGCAAGCCATTATATGGTCGTCCTAAAATCCATGTAAAGTTACAATTTTCGAGTGTTGTTGAAGACAGGAGCTGGTCCCAAGGAATCCGAGATCCGAAGTTCGGTGGTGTGCCCTTCACATTCTTCAAGCAAAGATGGGGTTGCAAAGTTTCTCTTTACCAAGATGCTCATGTTTTAAACAACTTCCTCCCTCGAGTTGGGTTGTCAAGAGGGAACTTTCATGAAGTTCATAGGTGTTGGGAGGACATTTTCGATGCAATTAGCAATGCGAAACACTTGATTTATCTAACTGGTTGGTCTGTGTATACTGAAATAACATTGATAAGAGACAGAGAAAGAAGACAAACAGGAGAGGATATTACTCTTGGGGAGCTGCTGAAGAAGAAAGCAGAGGAAGGTGTGACTGTTTTGCTTCTTGTTTGGGATGACAGAACTTCCATTGAAGAGTTCAAACGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGCAGAGTATTTCAGGGGCTCGAAGGTTCGATGCGTTCTGTGCCCACGGTATCCTGATGTTGGTAGAACCATAATTCAGGGGTTTGAGACAGCAACCACGTTTACTCACCACCAAAAAACATTGGTGCTTGATAGTGAAATAGCTGGTGGAGGAACAGGGAAAAGAAGGATCGTGAGCTTTGTTGGTGGTATTGATCTATGTGATGGGAGATATGATACACCAAAACACCCTTTGTTTTCAACTCTAGATTCAATCCACTATAAAGATTTTCACCAGCCTAACTTTTCAGGCTCTTCGATAAGGAAAGGCGGTCCTCGGGAACCATGGCATGACATCCATTGCCGCCTGGAAGGGCCAGTTGCTTGGGATGTTTTGTACAATTTTGAGCAGAGATGGCGAAAGCAAGTTGGAAATAACTCGTTGATTCCAATGCAAAAGTTTGAAGAAATCATTACTCGTCCCGTAATGGTATTACCATCAGACGACCCCGACACATGGAATGTTCAAATCTTTCGATCTATCGACGGTGGTGCTGTTGAGGGCTTTCCAGAGATACCTGAAGATGCTTCTAAACTAGGCCTTGTAAGTGGGAAGGATAGTGTTTTAGATAGGAGTATTCAAGATGCTTATATTAACGCCATTCGCCGAGCTAAAAATTTCATATACATTGAGAATCAGTATTTCATTGGAAGCTCTTATGGGTGGAAATCAAATGGTGTGAGGGTAGAAAGCATCAATGCTTTGCATCTTATTCCAAAGGAGATTTCATTGAAGATTGTAAGCAAGATTGAAGCTGGAGAGAGGTTTACAGCATATATTGTGATTCCAATGTGGCCGGAAGGTATTCCTGAGAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGGAGAACCTTAGACATGATGTACACTGATATAACTCAAGCTCTTCGGAAGAAGGGTCTCGACGCAAATCCTAGAGATTACCTGACGTTCTTCTGCCTTGGCAATCGAGAGAAAAAGAGAACTGGAGAATATATTCCACCGGAGAAACCAGAACCGAACTCGGATTACGCTCGTGCTCAAGAATTTCGACGTTTTATGATCTATGTTCATTCTAAAATGATGATAGTTGACGATGAATACATAATTATTGGGTCTGCAAACATCAACCAGAGGTCAATGGATGGAGGAAGAGACTCTGAGATAGCCATGGGAGCTTTTCAGCCGCATCACTTGGCATCTAGTGAGCCTGCAAGAGGTCAAATCTATGGCTTCCGAGTGGCTCTCTGGTATGAACATCTTGGTCTGTTTGACAAAGTCTTCCATAACCCGGAGAGTGAAGACTGTGTCCAATTCGTAAACAAGCTCGCCTTAGAAAACTGGCAATTTTACTCGGACGATACCTTTGATGGCGATCTTCCTGGTCATCTTCTTTCCTACCCCATCGAAGTAGGCCCCAATGGGTCGATCTCGGCGCTTAAAAAATTTGAACTTTTCCCTGACACGAAGGCTCGTGTTCTTGGGCAATTGTCTGATTATCTACCTCCAAACCTGACCACTTGA 2445 43.31 MPRLLHGTLHADIYGIDKLRTGCPVFCGKDKRSAKKFLAGMKRCLLCRPEIVGSQMYATLDLDKARVGRTRIVDQPYSPQWNDHFRIYCAHTLSHVIFTIKDGGVVGATLLGRAYVPVEDIIKGYVYERWVEILDEDRKPLYGRPKIHVKLQFSSVVEDRSWSQGIRDPKFGGVPFTFFKQRWGCKVSLYQDAHVLNNFLPRVGLSRGNFHEVHRCWEDIFDAISNAKHLIYLTGWSVYTEITLIRDRERRQTGEDITLGELLKKKAEEGVTVLLLVWDDRTSIEEFKRDGLMATHDQETAEYFRGSKVRCVLCPRYPDVGRTIIQGFETATTFTHHQKTLVLDSEIAGGGTGKRRIVSFVGGIDLCDGRYDTPKHPLFSTLDSIHYKDFHQPNFSGSSIRKGGPREPWHDIHCRLEGPVAWDVLYNFEQRWRKQVGNNSLIPMQKFEEIITRPVMVLPSDDPDTWNVQIFRSIDGGAVEGFPEIPEDASKLGLVSGKDSVLDRSIQDAYINAIRRAKNFIYIENQYFIGSSYGWKSNGVRVESINALHLIPKEISLKIVSKIEAGERFTAYIVIPMWPEGIPESASVQAILDWQRRTLDMMYTDITQALRKKGLDANPRDYLTFFCLGNREKKRTGEYIPPEKPEPNSDYARAQEFRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPHHLASSEPARGQIYGFRVALWYEHLGLFDKVFHNPESEDCVQFVNKLALENWQFYSDDTFDGDLPGHLLSYPIEVGPNGSISALKKFELFPDTKARVLGQLSDYLPPNLTT 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1728849 1732121 - CmoCh05G003840.1 Cmo05g00384 382519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00384 814 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 660 687 IPR001736 GO:0003824
Cmo05g00384 814 Gene3D Endonuclease Chain A 207 455 - -
Cmo05g00384 814 SMART pld_4 660 687 IPR001736 GO:0003824
Cmo05g00384 814 SMART pld_4 332 370 IPR001736 GO:0003824
Cmo05g00384 814 PIRSF PLD_plant 1 814 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cmo05g00384 814 Pfam Phospholipase D C terminal 732 803 IPR024632 -
Cmo05g00384 814 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 332 370 IPR001736 GO:0003824
Cmo05g00384 814 SUPERFAMILY Phospholipase D/nuclease 491 743 - -
Cmo05g00384 814 Gene3D Endonuclease Chain A 487 707 - -
Cmo05g00384 814 Gene3D C2 domain 41 165 IPR035892 -
Cmo05g00384 814 PANTHER PHOSPHOLIPASE D 3 814 IPR015679 -
Cmo05g00384 814 Pfam Phospholipase D Active site motif 661 687 IPR001736 GO:0003824
Cmo05g00384 814 Pfam Phospholipase D Active site motif 333 370 IPR001736 GO:0003824
Cmo05g00384 814 ProSiteProfiles C2 domain profile. 1 131 IPR000008 -
Cmo05g00384 814 CDD C2_plant_PLD 1 153 - -
Cmo05g00384 814 PANTHER PHOSPHOLIPASE D ALPHA 3 3 814 - -
Cmo05g00384 814 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 154 IPR035892 -
Cmo05g00384 814 Pfam C2 domain 54 133 IPR000008 -
Cmo05g00384 814 SMART C2_3c 8 130 IPR000008 -
Cmo05g00384 814 SUPERFAMILY Phospholipase D/nuclease 159 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00070 Cmo-Chr1:288813 Cmo05g00384 Cmo-Chr5:1728849 0 dispersed
Cmo05g00384 Cmo-Chr5:1728849 Cmo08g00643 Cmo-Chr8:4179383 0 dispersed
Cmo05g00384 Cmo-Chr5:1728849 Cmo05g00331 Cmo-Chr5:1463539 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00384 K01115 - csv:101207900 1544.25