Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00385 ATGGGATCGGAAGAAAGTGAAAAGATAGTGGTAACTCAAGTAAGCATTGGAGGATTTGACAGTGATGTTAAAGCACAAGATCTTATGAGTTATCTTGAATCTGAAATTGGGCTTGTGGACAGGTGTAGATTAAAAACTTCATGGACTCCTCCAGAATCGTACCCAGATTTTGACATCGTTAATGTCGCCGATGTCGTAAAATCTGATGATTATAAGAAGGTGGTGCCTCATGCATTTGTGCATTTTGCATTACCTGACTCAGCTGCTGGGGCTCTACATGCCGCGGGGCGTAATGAGCTATTTTTGAACGATAGATTGTTGAAGGTGAGTTTGGGGCCTGAGAGTCCATACCATGTAAATCAGAGGCGAAGGACTAAGGTTCCCTTTAAGTTATCTAATGTGCTTGTAGATATAGGGAACTTAACTTGTCAAGATGGGTTTTCGGTTGCTTGGAGAGGACCTTCCAGTGGAATGGATTTTCTGGTGGATCCCTTTGATGGAACCTGTAAATTTTGTTTCACGAGGGATACCGCGTTCTCTTTTAAAGATAACAACAAGCATACAGTGTTAAAGTGTGATTACAAGGTGGAGTTCTTGGTGAGGGACATTAATCAGATCAAAAGATATACAGATATATTATGTTACGTTATTCTCTTGCAACTTACTTCATCGCCCTGCATTTGGTATAGAACTGCAGATGATGATATCGCCAAATCAGTTCCGTATGATTTGTTGGACGATGACGATCCATGGATCCGGACAACAGATTTCACGATAAGTGGGGCTATTGGCCGTTGTAATACGTACAGAGTTTCAGTTCCACCCCGGTATGGTATCAAGCTGAATAATGCCATGAATTATTTAAAAGAACAAAGAGTGCACCAGGCGTCCCTCAAACGGCCTCCCAAGATCCTGAATGAACCAGATTATGGGGTGCAAATGACTGATCACTTCTTTTGCATCCATTACAAAGAAGACATATCCTTTGAACTGTTATTTCTAGTAAATGCCGTAATGCACAAAGGGATAATCAACCAGCACCAAATGACTGATAGATTCTTTGATTTGCTAAGAAACCAGCCCAATGAAGTTAGTTTGGCTGCTTTAAGTCATATTCATACGTATAGACATCCTGTACCGGACGCCTGTAAGAGGCTAAAACTTGTACAAGAATGGCTGTTGAAGAACCCCAGGCTTTGGAAAAGATCTAAAGAGCTGGTTGATATCATTGAAATCAGGAGATTAGTAATAACTCCATCAAAAGCATACTGTTTTCCACCTGAAGTTGAACTCTCCAATAGGGTTTTAAGAAGGTTCAAGGATGTTGCTGATAGGTTCCTCAGGGTTACCTTCATGGATGAAGGCATGAAGAAAATCAATTCACATGTTTATACCTATTATGTTGCTCCTATAGTAAAGGAAATTACTTCAAGCTCCTTTCCCCAGAAGACTAAAGTATTTGGGAGGATGAAACATATTCTGAAACATGGATTTTACTTGTGTGGTCGGAAATACTCCTTTTTGGCTTACTCGTCCAACCAACTGAGAGACCAATCAGCTTGGTTCTTTTCTGAATGCAAAGATGTTACTGTTGATAGTATTTTACGTTGGATGGGGAGATTTACGAACAAAAATGTTGCTAAGTGTGCTGCTAGAATTGGTCAGTGTTTTTCATCTACTTATGCAACAATTGAAGTTCCAAGAAACATGGTCAATCACCAACTTCCTGATGTTGAGAGGAATGACTATATTTTCTCTGATGGGATTGGTACCATTACTCCTGATCTAGCGCAGGAAGTTGCAGACAAATTAAAATTGGGTGGGAGCCCACCCTGTGCTTACCAAATTAGATATGCAGGTTGCAAAGGTGTTGTTGCCTCTTGGCCATCCAAGGGTGACGGGATCAGACTTGCTTTAAGACCAAGCATGAACAAATTTCAATCAGATCATAGAATCTTGGAGATTTGTTCATGGACTAGATTTCAACCAGGTTTTCTTAATAGGCAGATTATAACTCTTCTTTCTACACTAAATGTTCCTGATGAAATTTTCTGGAGTATGCAGGAGACCATGGTTTCAAAACTGGATAGAATGATCACTGATACAGATGTGGCGTTTGATGTTCTCACGGCATCCTGTGCCGAGCAAGGAAATGCAGCAGCAATTATGTTGAGTGCTGGTTTCGAACCTCAAACTGAACCTCATCTAAGGGGCATGTTAATGTGTATAAGAGCAGCGCAGCTCTGGGGCCTTCGGGAAAAAGCTAGGATCTTTGTTACTGATGGGAGGTGGTGTATGGGGTGCTTCGACGAGAGCGCCGTGCTACAAGGAGGCCAATGCTTCATTCAAGTATCCACTCCACTGCTTGAGAGGTGTTTCTCCAAGCATGGGTCTCTCTTTGATGAGACAAAGAACAATCTTACTGTGATAAGAGGGACTGTAGTCATAGCCAAAAATCCATGCCTTCATCCTGGAGACGTGAGAATTCTTGAAGCAGTTGATGCTCCTGAGTTGCATCATTTATACGATTGCCTCGTGTTTCCTCAAAATGGTGAACGACCCCATACAAACGAAGCTTCTGGAAGTGATTTGGATGGGGATCTCTACTTTATTACTTGGGATGAAAATCTTATTCCACCTAGTAGAAAAAGTTGGCCACCTATGAACTATGTTGCAGCAGAAGTAAAGACTCTTACACGCGAAGTTACGCGATTGATTCATTTCATTTGTCTGACTGTATGGAAAGAATGTGGTTTAGATGTGAGGAGCGGCCTATCTAGACAATCAAGCGAGCGTGATATAATGGAGTTCTTCGCCAAAAATATGATTAATGAGAGTCTTGGGACAATATGCAATGCGCATGTTGTTCATGCTGACCGCAGTGAGTATGGAGCTTTGGATGAGAACTGCATTAAATTATCTGAATTAGCTGCCACAGCAGTTGATTTCCCCAAAACAGGGAAGATTGTGACGATGCCTCCCCATTTAAAACCGAAACTATATCCAGATTTTATGGGAAAACAAGCTACTCAATCATACAAGTCCACCAAAATTCTGGGAAGAATGTATCGCCGAATTAGAGATGCATACGATGAAGATATGATCACAGCATGTGAGCTAAATTTTACTCCTGGCGATGTCTATTACGACGTAGATCTTGAAGTTGCAGGAGCAGCAGATTTCATAGCAGAAGCATGGAATCAAAAGTGTTCATATGACGGTCAGCTGAGCGGTTTACTAGGACAATATAAAGTTAGTAGGGAAGAAGAGATTGTCACCGGGCATATTTGGTCCATGCCAAAGTACAGTAGCAGGAAGCAAGGAGAGCTGAAGGAGAAGCTCAAGCATTCTTATAGCACTCTTAAGAAAGAGTTCAGGCAAGTTTTTGAGAACATTGGCCCAGAGTTTGAGCAACTCACTGACGATGAAAGGAATGCCTTGTATGAAAGAAAGGCATCTGCTTGGTATCAGGTGGCATACCATCCAACTTGGTTGAAGAAATCAATGGAGCTACGAGAACCTGACATTTCCGAGGCCACCCCAATGTTAAGCTTTCCTTGGATTGCTGCTGATTATCTTGCACGGATCAAGATAAAATGCCGGAAGATGAAAAGCTTCGACCCAACAAAGCCGATTAACTCATTGGCGAGCTATCTTTCCGATCGGATCTGA 3672 41.78 MGSEESEKIVVTQVSIGGFDSDVKAQDLMSYLESEIGLVDRCRLKTSWTPPESYPDFDIVNVADVVKSDDYKKVVPHAFVHFALPDSAAGALHAAGRNELFLNDRLLKVSLGPESPYHVNQRRRTKVPFKLSNVLVDIGNLTCQDGFSVAWRGPSSGMDFLVDPFDGTCKFCFTRDTAFSFKDNNKHTVLKCDYKVEFLVRDINQIKRYTDILCYVILLQLTSSPCIWYRTADDDIAKSVPYDLLDDDDPWIRTTDFTISGAIGRCNTYRVSVPPRYGIKLNNAMNYLKEQRVHQASLKRPPKILNEPDYGVQMTDHFFCIHYKEDISFELLFLVNAVMHKGIINQHQMTDRFFDLLRNQPNEVSLAALSHIHTYRHPVPDACKRLKLVQEWLLKNPRLWKRSKELVDIIEIRRLVITPSKAYCFPPEVELSNRVLRRFKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKVFGRMKHILKHGFYLCGRKYSFLAYSSNQLRDQSAWFFSECKDVTVDSILRWMGRFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHQLPDVERNDYIFSDGIGTITPDLAQEVADKLKLGGSPPCAYQIRYAGCKGVVASWPSKGDGIRLALRPSMNKFQSDHRILEICSWTRFQPGFLNRQIITLLSTLNVPDEIFWSMQETMVSKLDRMITDTDVAFDVLTASCAEQGNAAAIMLSAGFEPQTEPHLRGMLMCIRAAQLWGLREKARIFVTDGRWCMGCFDESAVLQGGQCFIQVSTPLLERCFSKHGSLFDETKNNLTVIRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCLVFPQNGERPHTNEASGSDLDGDLYFITWDENLIPPSRKSWPPMNYVAAEVKTLTREVTRLIHFICLTVWKECGLDVRSGLSRQSSERDIMEFFAKNMINESLGTICNAHVVHADRSEYGALDENCIKLSELAATAVDFPKTGKIVTMPPHLKPKLYPDFMGKQATQSYKSTKILGRMYRRIRDAYDEDMITACELNFTPGDVYYDVDLEVAGAADFIAEAWNQKCSYDGQLSGLLGQYKVSREEEIVTGHIWSMPKYSSRKQGELKEKLKHSYSTLKKEFRQVFENIGPEFEQLTDDERNALYERKASAWYQVAYHPTWLKKSMELREPDISEATPMLSFPWIAADYLARIKIKCRKMKSFDPTKPINSLASYLSDRI 1223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1732535 1738278 - CmoCh05G003850.1 Cmo05g00385 382520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00385 1223 PANTHER RNA-DEPENDENT RNA POLYMERASE 925 1223 IPR007855 GO:0003968
Cmo05g00385 1223 Pfam RNA dependent RNA polymerase 417 1026 IPR007855 GO:0003968
Cmo05g00385 1223 CDD RRM_SF 14 110 - -
Cmo05g00385 1223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 114 IPR000504 GO:0003723
Cmo05g00385 1223 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 925 1223 - -
Cmo05g00385 1223 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 907 IPR007855 GO:0003968
Cmo05g00385 1223 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 7 907 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00385 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101217108 2230.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00385 Cmo-Chr5:1732535 Cmo10g00144 Cmo-Chr10:662653 1.04E-169 dispersed
Cmo05g00385 Cmo-Chr5:1732535 Cmo04g02226 Cmo-Chr4:16634477 1.30E-171 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g477 . . . . Bpe02g01245 . . . Cmo05g00385 . . Cma05g00384 . . . . . Bhi04g00961 . . . Hepe10g0255 . . . . . . . . . Cone4ag1794 . . . . . . . . Blo18g00027 Bda01g01000 . . . Bma01g01277 . . . . . . . . Cpe11g00329 . . . . . . . . Cla08g01331 Cam08g1793 Cec08g1372 . Clacu08g1487 . . Lsi08g01203 . Chy03g01123 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006584 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00385 Cmo_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0