Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00386 ATGAAAAGTGATTCTGAATCAATCGAAGCCACTAACCTTGAAGAACAAGAACTTGCGGATTGGCTTCCTCTAATCGTCGAGTTCATAGCAGGCTACCAGGAAGAAATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCCCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGGTTTGAGCATCCATCTGAAGTGCAACACGAATGTATTCCCCAAGCTATTCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGCAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCACTAGTTCTGTGCCATACGAGGGAGCTTGCATACCAGATCTGTCATGAATTTGAGAGGTTCAGCACTTATCTTCCCGATCTAAAGGTTGCTGTCTTCTATGGTGGGGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATTGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGACAAGGACCTATCTCTGAAGAACGTCCGACATTTTATCTTGGATGAGTGTGACAAGATGCTTGAGTCCCTTGATATGCGGAGAGACGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTCTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGACCCAATGGAAATATACGTAGATGACGAGGCAAAGCTGACCTTGCATGGTCTTGTCCAGCATTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGCTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAGTAGAGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCTATATGCATCCACTCTGGCATGTCTCAAGAAGAGAGGTTGACTCGATACAAGGGCTTTAAAGAAGGACATAAGCGGATTCTTGTGGCAACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTAAACATTGTCATCAATTATGACATGCCAGATTCTGCTGATACTTATTTGCACAGGGTCGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCCATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTCGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACATACACCAAATTTTTCTCTTGTTGGTTGCAGTGCCATCATAGACGTAGAGATCATCAGCATAGAAATCGGCTACCTGGGTTGGTGAGGGTGGTTCACATGTCATTGTAG 1482 43.39 MKSDSESIEATNLEEQELADWLPLIVEFIAGYQEEMGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYTKFFSCWLQCHHRRRDHQHRNRLPGLVRVVHMSL 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1738046 1744309 + CmoCh05G003860.1 Cmo05g00386 382521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00386 493 CDD SF2_C_DEAD 298 427 - -
Cmo05g00386 493 CDD DEADc_DDX39 80 287 - -
Cmo05g00386 493 Pfam DEAD/DEAH box helicase 106 271 IPR011545 GO:0003676|GO:0005524
Cmo05g00386 493 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Cmo05g00386 493 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 62 457 - -
Cmo05g00386 493 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 458 IPR001650 -
Cmo05g00386 493 Pfam Helicase conserved C-terminal domain 311 418 IPR001650 -
Cmo05g00386 493 SMART helicmild6 337 418 IPR001650 -
Cmo05g00386 493 SMART ultradead3 100 301 IPR014001 -
Cmo05g00386 493 Gene3D - 294 462 IPR027417 -
Cmo05g00386 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 429 IPR027417 -
Cmo05g00386 493 Gene3D - 77 293 IPR027417 -
Cmo05g00386 493 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 285 IPR014001 -
Cmo05g00386 493 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 62 457 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00386 Cmo12g00285 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00386 Cmo-Chr5:1738046 Cmo06g01115 Cmo-Chr6:8585371 1.25E-80 dispersed
Cmo12g00285 Cmo-Chr12:1809619 Cmo05g00386 Cmo-Chr5:1738046 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00386 K12812 - csv:101217346 829.32