Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00413 ATGACAAAGAAGAAGAACCCATTGGTTTTTCTGGATGTCTCAATTGATGGAGACCCCAAGGAAACAATGGTTTTTGAGCTGTTTTATGATGTTGCTCCAAAAACGGCTGAGAATTTTCGTGCTCTGTGTACAGGAGAGAAAGGAATTGGCCGAAAAACGGGAAGACCACTACATTATAAGGCATCCTTTTTTCATCGGATTCTTAGAGGTTCCATGGCACAGTCAGTTACCCTTGTTTATGCTGTAGGCTACAGGGCTGATGGTCAAGAATCCTTTTCTTGTGATGTAGTTTTAAGGTTGTACTTGTTAAGCTGTCCATATTTTTTTTACTTAGTTCTCATTGATACCCAAGCTGGAGATTTTGTCAAACGAGATGGTACTGTTGGAGAGAGCATATACAGTGGAAAGTTTCCAGATGAACCTCCTCGGCTAAAACATGATGGACCTGGTCTTCTATCGATGGCAATTGCTGACCGTGACAATTTAGGCTCCCATTTTCTTATCACATTTAAGGCCAATAATCATCTTGACAGGAAGCATATAGTATTTGGAAAACTTGTCCAGGGTTTTGACGTACTGAAAAAGATAGAAAGTGTGGATGTAGAGGATGGTGTTCCAACTGTTACAGTGAAAATTGTCAACTGTGGCGAGTTTAATGAAGAAAAAAGAAAGATAAACAAAATGAAAATAGGAAAGATTACTTCTTCAGATGACGATAGTCATGAAGAAAAGCGAAGAGGAAAGCAGAAAAGAACAAGGGAGAGGAGGAGGAGGAAGAGAAGATACCACACATCTGATTCAGATAGTTCATCTGATTCGGAATTAGACTCCGACTCTGAGAGTGATTCTGACACAGATTTGTCGTCGTCCTCTTCTTCTGAAAGTTCTTCCAGTGATGACAGGTCTAGAAAGAGAAAGAAGGCTTCTATGAGAGGCAGATATAGACGTGGTAAAAGAAAGGATAAAAGACGTGACCGAAAGAGATGGAGGCATGATAAGAAGTCTAAAAGAAAATCTAAAAGGAGCTTGAAAATGTATGATCTTGATACAGTTGATTGTTTGGTTCATGTCCTTCGGTTTTCTACGCATGCTTTTAAGGCCTTGGACAGTCTTACGGATACTGAAAGTGACAGCAAAAGCAGAAGCACTTCTGTGCAAGATGGCCTTGATGTTCAAGGGAAAGATATAAACCGTAAGGGCTTGTCGGTGAAACCTGCTGAAGATGTACCTCAAGCCTCAGATGCCTGCCATAGAAGGAGAGGAGAGGTAGATATGGTGGAAAATGATGGGGAGAGATCCCATAAGGAGAATGGTGAGCGAAGGAGCAATGGCATTGCTGAAGTGAATTCTAAATCTGACAGATGCTGTGAAAGACAACCTGATATTGTAGACGACCACCCTGGAAAATCTAGGTCCACTCTCTATTCTTGTCACGCCTCAGTTATTCTTTGTGCTTAA 1458 41.08 MTKKKNPLVFLDVSIDGDPKETMVFELFYDVAPKTAENFRALCTGEKGIGRKTGRPLHYKASFFHRILRGSMAQSVTLVYAVGYRADGQESFSCDVVLRLYLLSCPYFFYLVLIDTQAGDFVKRDGTVGESIYSGKFPDEPPRLKHDGPGLLSMAIADRDNLGSHFLITFKANNHLDRKHIVFGKLVQGFDVLKKIESVDVEDGVPTVTVKIVNCGEFNEEKRKINKMKIGKITSSDDDSHEEKRRGKQKRTRERRRRKRRYHTSDSDSSSDSELDSDSESDSDTDLSSSSSSESSSSDDRSRKRKKASMRGRYRRGKRKDKRRDRKRWRHDKKSKRKSKRSLKMYDLDTVDCLVHVLRFSTHAFKALDSLTDTESDSKSRSTSVQDGLDVQGKDINRKGLSVKPAEDVPQASDACHRRRGEVDMVENDGERSHKENGERRSNGIAEVNSKSDRCCERQPDIVDDHPGKSRSTLYSCHASVILCA 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1892276 1897301 - CmoCh05G004130.1 Cmo05g00413 382548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00413 485 Gene3D - 1 219 IPR029000 -
Cmo05g00413 485 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 217 IPR002130 GO:0000413|GO:0003755
Cmo05g00413 485 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 1 344 - -
Cmo05g00413 485 MobiDBLite consensus disorder prediction 371 453 - -
Cmo05g00413 485 MobiDBLite consensus disorder prediction 306 341 - -
Cmo05g00413 485 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Cmo05g00413 485 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 150 165 IPR002130 GO:0000413|GO:0003755
Cmo05g00413 485 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 178 193 IPR002130 GO:0000413|GO:0003755
Cmo05g00413 485 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 165 177 IPR002130 GO:0000413|GO:0003755
Cmo05g00413 485 MobiDBLite consensus disorder prediction 411 442 - -
Cmo05g00413 485 MobiDBLite consensus disorder prediction 227 341 - -
Cmo05g00413 485 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 344 - -
Cmo05g00413 485 SUPERFAMILY Cyclophilin-like 4 217 IPR029000 -
Cmo05g00413 485 MobiDBLite consensus disorder prediction 227 247 - -
Cmo05g00413 485 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 216 IPR002130 GO:0000413|GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00413 K09566 PPIG; peptidyl-prolyl isomerase G (cyclophilin G) [EC:5.2.1.8] - csv:101210345 505.753
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00413 Cmo12g00276 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00413 Cmo-Chr5:1892276 Cmo17g01187 Cmo-Chr17:9549269 6.50E-73 dispersed
Cmo05g00413 Cmo-Chr5:1892276 Cmo12g00276 Cmo-Chr12:1764470 1.68E-123 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g446 . . . . Bpe02g01238 . . . Cmo05g00413 Cmo12g00276 . Cma05g00402 . Car12g00307 . Cpe07g00284 . Bhi04g00994 . . . Hepe10g0270 . . . . . . . . . Cone4ag1806 Cone7ag1714 . . . . . Cme03g01642 Blo17g00026 Blo18g00035 Bda01g00993 . . . Bma01g01285 Bma02g00030 . . . . Cma12g00325 . Car05g00336 Cpe11g00342 . . . . . . . . Cla08g01312 Cam08g1772 Cec08g1354 Cco08g1474 Clacu08g1468 . Cre08g1255 Lsi08g01176 . Chy03g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000569 2 5 4 4 2 3 5 3 3 3 3 3 5 3 2 5 3 6 6 3 3 4 3 3 1 2 2 8 4 2 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00413 Cmo_Chr05 FPKM 1.5915 1.422652 20.490032 19.976095 133.5905 124.512779 126.986603 18.16856 18.494026 19.929256