Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00415 ATGGCGCTGCCAAATCAGGCCACCGTGGAGTATCCTAGCTTCAAGCTTGTAATTGTTGGCGATGGTGGAACAGGGAAGACAACCTTTGTTAAACGTCATCTTACTGGAGAGTTCGAGAAGAAATATGAACCGACAATCGGAGTTGAAGTTCATCCACTGGACTTCTTTACGAACTATGGAAAGATAAGGTTTTACTGCTGGGATACCGCTGGTCAGGAGAAGTTTGGTGGACTTCGAGATGGTTACTATATTCATGGGCAGTGTGCTATCATCATGTTTGATGTCACTGCTCGTTTAACGTACAAAAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTTTGTGAGAACATACCGATCGTATTGTGTGGAAACAAGGTCGATGTGAAAAATAGACAGGTTAAAGCAAAGCAGGTGACTTTCCACAGGAAGAAAAATCTCCAATATTACGAAATCTCTGCAAAGAGTAATTACAACTTTGAGAAGCCCTTTTTGTACCTTGCCAGAAAGCTTGCTGGGAACACGGAGCTCCAGTTCGTCGAATCACCTGCCCTGGCTCCTCCTGAAGTCCAAATTGACATGGCTGTACAAGCACAGCACGAAGCAGAGTTAGCGCAAGCTGCTGCACAACCTCTTCCTGATGAAGACGATGATGCTTTTGACTGTTGGTTGTGTAATTCACCAAGTGATTGTCATGGTAGGTTTTGGTTTGATATAGTACTTACTACCGTTATCGATTACAGTTTTGATATATGA 756 43.65 MALPNQATVEYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELQFVESPALAPPEVQIDMAVQAQHEAELAQAAAQPLPDEDDDAFDCWLCNSPSDCHGRFWFDIVLTTVIDYSFDI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1905272 1908760 - CmoCh05G004150.1 Cmo05g00415 382550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00415 251 CDD Ran 14 179 - -
Cmo05g00415 251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 197 IPR027417 -
Cmo05g00415 251 SMART rab_sub_5 14 174 - -
Cmo05g00415 251 TIGRFAM small_GTP: small GTP-binding protein domain 14 164 IPR005225 GO:0005525
Cmo05g00415 251 Gene3D - 4 219 IPR027417 -
Cmo05g00415 251 PANTHER RAN GTPASE 1 221 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo05g00415 251 ProSiteProfiles small GTPase Rab1 family profile. 8 225 - -
Cmo05g00415 251 SMART ras_sub_4 11 174 - -
Cmo05g00415 251 SMART rho_sub_3 16 170 IPR001806 GO:0003924|GO:0005525
Cmo05g00415 251 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 168 190 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo05g00415 251 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo05g00415 251 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 74 92 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo05g00415 251 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 94 115 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo05g00415 251 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 130 148 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo05g00415 251 ProSiteProfiles small GTPase Ras family profile. 5 241 IPR001806 GO:0003924|GO:0005525
Cmo05g00415 251 SMART ran_sub_2 19 220 - -
Cmo05g00415 251 ProSiteProfiles small GTPase Ran family profile. 7 171 IPR002041 GO:0003924|GO:0005525|GO:0006913
Cmo05g00415 251 Pfam Ras family 15 171 IPR001806 GO:0003924|GO:0005525
Cmo05g00415 251 PANTHER GTP-BINDING NUCLEAR PROTEIN 1 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00415 K07936 RAN; GTP-binding nuclear protein Ran - csv:101219711 424.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00415 Cmo-Chr5:1905272 Cmo11g00554 Cmo-Chr11:2702633 1.71E-157 dispersed
Cmo10g00615 Cmo-Chr10:2792194 Cmo05g00415 Cmo-Chr5:1905272 1.16E-128 wgd
Cmo12g00273 Cmo-Chr12:1749229 Cmo05g00415 Cmo-Chr5:1905272 1.50E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g440 Blo01g01374 Blo12g01084 Bda01g00730 Bda03g00063 . . Bma04g00061 . Cmo05g00415 . . Cma05g00404 . Car12g00303 . Cpe07g00282 . . . . . . . . . . . . . . . . . Cone17ag1036 . . . . . . . . . . Bpe04g00049 . . . . . . . . Car05g00338 Cpe11g00344 . . . . . . . . Cla08g01310 Cam08g1770 Cec08g1351 Cco08g1472 Clacu08g1466 . Cre08g1253 Lsi08g01174 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000590 3 3 3 1 2 4 3 4 4 1 4 4 3 4 4 6 4 5 3 4 4 2 3 3 1 3 4 6 5 4 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00415 Cmo_Chr05 FPKM 1.727193 2.161372 0.53509 0.376404 9.168328 6.082126 7.544721 0.062639 0.106169 0.158682