Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00417 ATGGGGGCTCCATTCGAGGGAATAGCAAATGATTTCAAGGGGAGGATAGCATGCTACAAACAGGATTGGGTTTGTGCACTATGTTCAGGCGTCAGGATTTTAGCTCCTACTATGTACATTTTCTTCGCCTCTGCTCTTCCTGTTATCGCCTTTGGAGAGCAACTTAGTAGGGATACAGGTGGAAGTTTGAGCACAGTGGAAGCATTAGCCTCAACTGCGCTGTGTGGAATTATCCACTCAATATTTGGGGGGCAGCCTTTGCTGATTTTAGGAGTGGCAGAACCAACAGTTATAATGTACATTTACCTGTACAATTTCTGCAAAGGCAGGCCGGAGTTAGGGGGCAAGCTCTTTTTAGCGTGGGCTGGATGGGTGTGCATCTGGACAGGATTCTTCCTGATTCTCCTCGCAATCTTCAATGCTTGCGCTGTCATCACCAAATTTACAAGAGTTGCGGGGGAATTATTTGGCATGCTTATTGCTGTTCTTTTCTTCCAAGAGGCAATAAAGGGATTGATCAGCGAGTTCAATATTCCCAAGTCAGAAAATCCAGAGGAAGTGAAGTACCAATTTCAATGGTTGTATACAAATGGGTTGCTTGCTATCATTTTTTCTGTGGGTTTACTCTTCACAGCCTTGAAAAGCAGACATGCTAGATCATGGAAATATGGCACTGGGTGGTTTCGGAGTTTCATTGCGGACTATGGGGTTCCACTTATGGTCGTGTGTTGGACAGCATTGTCTTATGGAGTTCCCAGCAAAGTTCCAGATGGAGTTCCAAGGAGACTCTTTTGTCCATTACCTTGGGAACCAGCCTCATTGTACCACTGGACTGTAGTGAAGGACATGGGGAAGGTTCCGCCGACTTTCATCCTTGCTGCTTGTCTGCCAGCCATGATGATAGCAGGTCTATACTTTTTTGACCATAGTGTTGCATCACAATTGGCTCAACAGAAAGAGTTTAATCTTCAAAAGCCATCTGCATATCATTATGACGTCCTCTTGCTTGGGATTATGACTTTGATTTGTGGATTGCTTGGATTACCTCCTTCTAATGGTGTTCTCCCACAGTCCCCAATGCACACCAAGAGTCTGGCAGTGCTTAAACGGCAGCTAATTCGAAGAAAAATGGTAAAGAGTGCAAAAGAATGTATCAAACAAAAAGCTAGCAACTCTGAAATTTATGGAAAGATGCAGGCTGTGTTCATTGAAATGGACACATCTCCAACTCCTAAAGAGCTAGAAACCTTGACAAAGGCAGTGATGAATGCTGATGATGGTAATCAGGACGGAAAATTCGATGCTGAGAAAAATATAGATCCTTATTTGCCTGTTCGTGTGAATGAGCAAAGGATGAGCAACTTGCTGCAGTCTTTCCTTGTTGCCTTAACATTACTTGCTATCCCTATAATGAAAATGATACCCACTTCTGTTCTGTGGGGATACTTTGCTTATATGGCCATTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGGATGTTATTGCTCTTCATTACACCCGGTCGGCGTTTCAAGGTCTTGGAGGGGTCTCATTTATCCATTGTTGAATCTGTGCCATTCAAGATCATCGCATCATTTACCCTCCTTCAGTTTGCATATTTCTTGCTGTGCTTTGGTGTAACATGGATACCTGTAGCTGGAATCATGTTCCCACTTCCATTTTTCCTCCTCATTAGCATAAGAGAGCATGTGCTCCCCAAGTTCTTCCAGCATAGCCATCTTCAAGAGCTCGATGCTTCGGAGTACGAGGAGATTGCCGGTGCTCGACGTCGTGCCAACGTTCCGGAAAAGGAACGACCTGATACAATTGTGGAAGAAAATAACGAAGAATACTATGATGCGGAGATATTAGATGAGATGACAACTCATAGAGGAGAGTTGAAGCTTAGGACTGTAAGTCACAACGAAGAACGGTTCCTGCAGATTCATCCTGAAGATTCCCTTCAAAGACAATGA 1977 43.96 MGAPFEGIANDFKGRIACYKQDWVCALCSGVRILAPTMYIFFASALPVIAFGEQLSRDTGGSLSTVEALASTALCGIIHSIFGGQPLLILGVAEPTVIMYIYLYNFCKGRPELGGKLFLAWAGWVCIWTGFFLILLAIFNACAVITKFTRVAGELFGMLIAVLFFQEAIKGLISEFNIPKSENPEEVKYQFQWLYTNGLLAIIFSVGLLFTALKSRHARSWKYGTGWFRSFIADYGVPLMVVCWTALSYGVPSKVPDGVPRRLFCPLPWEPASLYHWTVVKDMGKVPPTFILAACLPAMMIAGLYFFDHSVASQLAQQKEFNLQKPSAYHYDVLLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRRKMVKSAKECIKQKASNSEIYGKMQAVFIEMDTSPTPKELETLTKAVMNADDGNQDGKFDAEKNIDPYLPVRVNEQRMSNLLQSFLVALTLLAIPIMKMIPTSVLWGYFAYMAIDSLPGNQFWERMLLLFITPGRRFKVLEGSHLSIVESVPFKIIASFTLLQFAYFLLCFGVTWIPVAGIMFPLPFFLLISIREHVLPKFFQHSHLQELDASEYEEIAGARRRANVPEKERPDTIVEENNEEYYDAEILDEMTTHRGELKLRTVSHNEERFLQIHPEDSLQRQ 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1919077 1923438 - CmoCh05G004170.1 Cmo05g00417 382552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00417 658 PANTHER BORON TRANSPORTER 6-RELATED 3 654 - -
Cmo05g00417 658 PANTHER ANION EXCHANGE PROTEIN 3 654 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cmo05g00417 658 Gene3D Helical hairpin bin 15 57 - -
Cmo05g00417 658 Pfam HCO3- transporter family 445 507 IPR011531 GO:0006820|GO:0016021
Cmo05g00417 658 Pfam HCO3- transporter family 4 178 IPR011531 GO:0006820|GO:0016021
Cmo05g00417 658 Pfam HCO3- transporter family 195 371 IPR011531 GO:0006820|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00417 Cmo12g00272 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00417 Cmo-Chr5:1919077 Cmo13g00915 Cmo-Chr13:8095554 0 dispersed
Cmo14g01361 Cmo-Chr14:11281181 Cmo05g00417 Cmo-Chr5:1919077 0 transposed
Cmo12g00272 Cmo-Chr12:1739477 Cmo05g00417 Cmo-Chr5:1919077 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00417 K24194 - csv:101220188 1196.8