Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00418 ATGAGCCTGATCGTCCCACTGCCATCAAACCTCCTCCCAGATCCGGCGAACCCGGAATGGATGAGCAAAGGCGACAACGCCTGGCAGATGACGGCGGCGACATTGGTGGGGCTGCAAAGCGTGCCAGGTCTGATAATCCTATACGGCGGGGCGGTGAAGAAGAAATGGGCCATAAACTCAGCCTTCATGGCGCTGTACGCCTTTGCGTGCGTGCTGGTGTGTTGGGTGGGGTGGGGGTACCGGCTGTCGTTTGGGGATAAGTTACTGCCGTTTTGGGGGAAGCTGAATGTGGCGTTGGACCAGCAGTTTCTGCTGGAACAGGCGTTTAGTGGGAAGCTGCCGTCGGCGACAATGGTGTTCTTTCAATTCGTATTTGCGGCGATTACTCTGGTTTTGATTGCAGGGGCGCTGCTTGGGCGGATGAACTTCTACGCTTGGATGCTGTTCGTGCCGCTTTGGCTTACGTTTTCGTATACGTTTGTGGCGTTTAGTATTTGGAGTCCTAATGGGTTTTTCTTTAAAATGGGACTCATTGATTACTCTGGTGGCTACGTCATTCATTTGTCCTCTGGCGTTGCCGGCTTCACCGCTGCATATTGGGTTGGGCCACGGCTGTCCAAAGACAGAGAAAGCTTCCCTCCAAACAACATTCTTCTAATGCTGGCCGGAGCAGGGCTGCTGTGGATGGGCTGGACCGGGTTCAACGGCGGAGACCCGTACGCCGCCAACATCGACGCCTCACTGGCAGTTCTAAACACCCACGTTTGCACCGCCACCAGCCTCCTCACTTGGCTCATCTTCGACATAATCTTCTTCCGAAAGCCCTCCGTTATAGGCGCCGTCCAGGGCATGATCACCGGCCTCGTTTGCATCACCCCCGCCGCAGGTCCCTCCCTTATTAACCCCCCACCATCTTTTTTACCCTCTCTCTCTCTCTCTCTCTCTCTCAGTAATTATTCATTTAAATTAGGAGTTGTCCAAGGATGGGCCGCGATTATAATGGGCTTGCTATCAGGATCCATCCCATGGTTCACAATGATGGTGGTTCACAAGAAATCCGCCATCCTCCAAAAGGTGGACGACACAATGGCCGTGTTCCACACCCACGCCATCGCCGGCAGCCTAGGCGGCATTTTAAGCGGCATCTTCGCCGAGCCACGCCTCAACTTCGTCTACTACGGCGCCTACAACAAGTACGTTGGCCTTTTCTACGGCTTCAACTCAAAGCAAGTCAAGCTCGGCTTCCGCCAACTCGGCGTCCAGCTCCTTGGTATCCTCTTCGTCACCCTCATAAACATTATCGTCACTAGCCTTATATGCGTCCTCCTCCAATACATCGTGCCACTCCGAATGTCCGAGGAGGACATGGCCATTGGCGACGAGGCCGCCCACGGTGAAGAGGCCTATGCTATTTGGGGCCAAGGCGAGAAGATGGACTCTTCTAAGTACGATATTGAAGTCCCGGTTGTGGCCAAGCATAGGCATGCAGGCCATGTTGAAATGGCATGA 1509 54.21 MSLIVPLPSNLLPDPANPEWMSKGDNAWQMTAATLVGLQSVPGLIILYGGAVKKKWAINSAFMALYAFACVLVCWVGWGYRLSFGDKLLPFWGKLNVALDQQFLLEQAFSGKLPSATMVFFQFVFAAITLVLIAGALLGRMNFYAWMLFVPLWLTFSYTFVAFSIWSPNGFFFKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLSKDRESFPPNNILLMLAGAGLLWMGWTGFNGGDPYAANIDASLAVLNTHVCTATSLLTWLIFDIIFFRKPSVIGAVQGMITGLVCITPAAGPSLINPPPSFLPSLSLSLSLSNYSFKLGVVQGWAAIIMGLLSGSIPWFTMMVVHKKSAILQKVDDTMAVFHTHAIAGSLGGILSGIFAEPRLNFVYYGAYNKYVGLFYGFNSKQVKLGFRQLGVQLLGILFVTLINIIVTSLICVLLQYIVPLRMSEEDMAIGDEAAHGEEAYAIWGQGEKMDSSKYDIEVPVVAKHRHAGHVEMA 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1926187 1928716 - CmoCh05G004180.1 Cmo05g00418 382553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00418 502 PANTHER AMMONIUM TRANSPORTER MEP2 2 296 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cmo05g00418 502 PANTHER AMMONIUM TRANSPORTER MEP2 323 501 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cmo05g00418 502 Gene3D Ammonium transporter AmtB like domains 13 310 IPR029020 -
Cmo05g00418 502 ProSitePatterns Ammonium transporters signature. 179 204 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cmo05g00418 502 PANTHER AMMONIUM TRANSPORTER 2 296 - -
Cmo05g00418 502 SUPERFAMILY Ammonium transporter 324 451 - -
Cmo05g00418 502 SUPERFAMILY Ammonium transporter 20 296 - -
Cmo05g00418 502 PRINTS Rhesus blood group protein signature 122 138 IPR002229 GO:0005887
Cmo05g00418 502 PRINTS Rhesus blood group protein signature 249 271 IPR002229 GO:0005887
Cmo05g00418 502 PRINTS Rhesus blood group protein signature 218 236 IPR002229 GO:0005887
Cmo05g00418 502 Pfam Ammonium Transporter Family 324 469 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cmo05g00418 502 Pfam Ammonium Transporter Family 27 296 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cmo05g00418 502 Gene3D Ammonium transporter AmtB like domains 320 473 IPR029020 -
Cmo05g00418 502 PANTHER AMMONIUM TRANSPORTER 323 501 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00674 Cmo-Chr3:5981770 Cmo05g00418 Cmo-Chr5:1926187 0 dispersed
Cmo05g00418 Cmo-Chr5:1926187 Cmo14g00042 Cmo-Chr14:211056 6.93E-125 dispersed
Cmo05g00418 Cmo-Chr5:1926187 Cmo06g00209 Cmo-Chr6:1128381 4.42E-179 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00418 K03320 - csv:101210590 867.07