Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00421 ATGTCGAGCGCCGTCTTGGTTGCACGCTCTAGCTCCTGGTCTCGTGCTCTCATCAACATCTCTCCGTACACCTTCTCTGCCGTTGGCATCGCCATCGCCATCGGCGTTTCTGTCCTCGGTGCAGCCTGGGGGATTTACATCACGGGAAGCAGTTTGATTGGTGCGGCGATCAAAGCTCCTCGTATTACTTCCAAGAACTTGATTAGCGTAATTTTCTGTGAAGCTGTTGCTATATACGGTGTTATTGTTGCGATTATCTTACAGACCAAGTTAGAGAGTGTGTCAGCATCTCAAATCTATGCCCCCGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCTAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCATTATCAGATGCCCAAAACTCCTCCCTCTTCGTGAAGATTCTAGTAATCGAGATCTTTGGCAGTGCACTTGGGTTGTTCGGAGTGATCGTCGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGACAGGTTGA 549 48.63 MSSAVLVARSSSWSRALINISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1939914 1941651 - CmoCh05G004210.1 Cmo05g00421 382556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00421 182 Gene3D - 23 177 IPR035921 -
Cmo05g00421 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Cmo05g00421 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Cmo05g00421 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cmo05g00421 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Cmo05g00421 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo05g00421 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo05g00421 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo05g00421 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo05g00421 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cmo05g00421 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cmo05g00421 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cmo05g00421 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01544 Cmo-Chr1:11905961 Cmo05g00421 Cmo-Chr5:1939914 6.33E-109 dispersed
Cmo05g00421 Cmo-Chr5:1939914 Cmo12g00375 Cmo-Chr12:2323767 1.41E-21 dispersed
Cmo12g00266 Cmo-Chr12:1716019 Cmo05g00421 Cmo-Chr5:1939914 4.00E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00421 K03661 - csv:101221052 328.946