Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00424 ATGAGCCTACGCAAGGGCTCTAAGGTTTGGGTGGAAGACAGGGATTCTGCTTGGGTGGCTGGTGAAGTCATCGAGTTCGGCGGTAAACAAGCTCGAGTTGCAACTATTACTGGAAAGAAGGTCTTGGCTCTTCCTGAGAAGCTTTTGCCGAGGGATGCGGATGAGGACGAGCATGGAGGGGTGGATGATATGACGAAGTTGACCTATTTGAATGAGCCTGGGGTGCTTTATAATCTTCGAAGAAGATATTCTCTCAATGACATATATACATACACAGGTAGCATTTTGATTGCTGTTAATCCATTCACAAAGCTTCCCCATCTATACAATGTTCACATGATGGAGCAGTACAAGGGAGCACCTTTTGGGGAACTGAGCCCCCATGTTTTTGCAGTTGCTGATGCATCCTATAGAGCAATGATTAGTGAGGGTCGAAGCCAGTCAATATTGGTCAGTGGAGAGAGTGGTGCAGGGAAAACCGAGACAACAAAATTGATTATGCAGTATCTTACATTTGTTGGAGGTCGAGCGTCTGGCAATGACAGAACTGTTGAGCAACAAGTTCTTGAATCAAATCCTTTACTGGAAGCATTTGGTAATGCAAGGACAGTTAGAAACGATAATTCAAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATACGAATGGTAGAATATCGGGTGCTGCAATTAGAACTTATCTTCTAGAACGTTCTCGTGTTGTGCAAATTACGAACCCTGAGAGGAACTATCATTGTTTTTATCAGCTATGTGCATCTGGCAGGGATGCAGAGAAGTACAAGTTAGACCACCCAAGTCATTTTCGATACTTAAATCAAAGCAAGACCTATGAATTAGATGGAGTGAGCAATGCTGAGGAGTATATTAGGACAAGGAGGGCAATGGATATAGTTGGTATCAGCCATGAGGATCAGGAAGCTATCTTTCGTACCTTGGCTGCAATTTTGCATTTGGGGAACATTGAGTTTTTGCCTGGAAAAGAACACGACTCTTCCATCTTGAAGGATGAAAAGTCTACCTTTCATTTAGGGGTGGCTTCTAATCTTCTCATGTGTAATTCCAACCTCTTGGTCTCAGCCCTTTGTACTCGTTCAATTCATACTCATGAAGGAATTATTGTCAAAGCGCTAGATTGTGAAGGTGCCGTTGCTAGTCGAGATGCATTGGCAAAGACTGTTTACGCTCGTCTGTTTGATTGGCTTGTTGATAAGATCAACCGATCTGTCGGACAAGATCCAAATTCTCAATTTCAAATTGGGTTATTGGACATTTATGGTTTTGAATGCTTTAAGGACAATAGTTTTGAGCAGTTTTGCATCAATTTTGCGAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTGTTTAAGATGGAGCAGGAAGAGTATAGCAAAGAGGAAATAAATTGGAGCTACATTGAATTCATCGACAATCAGGATGTGTTGGATTTGATTGAGAAGAAACCTATTGGGATCATTGGTTTGCTGGATGAGGCTTGCCTGTTTCCAAGATCAACTCATGAAACATTCTCAACCAAATTATTTCAGAACTTTCATACTCACCCAAGGTTGGAAAGAACAAAATTTTCAGAAACAGATTTCACTCTTTCCCATTATGCTGGAAAGGTCACTTATCATACAGACACCTTTTTAGATAAAAATCGTGATTATGTTGTGGTAGAGCATTGCAGTCTATTGGCTTCTTCTAGATGCACTTTTGTTGCTGGCCTTTTCTCTTCCGTTCCAGAGGAATCTTCAAGATCATCGTATAAATTTTCTTCTGTAGCCTCAAGATTTAAGCAACAACTTCAAGCACTTATGGAGACACTGAATTCTACTGAGCCCCATTATGTACGCTGTGTGAAGCCAAATTCTCTTAATAAGCCCCAGAAGTTTGAGAACCCAAGCATTCTGCATCAATTACGTTGTGGGGGTGTTTTGGAAGCTGTTCGAATAAGTCTTGCAGGTTATCCCTCCAGAAGAACTTATACAGAGTTTATTGACCGTTTTGGTTTGTTGGCTCCTGATTTATTGGATGGAAGCTACGATGAAAGGTTGATAACAGAAAAAATTCTACAAAAGTTGAAGCTAAAAAATTTTCAGTTAGGTAGGACCAAAATATTTCTCAGGGCTGGTCAAATTGGCATTCTGGATGCTCGAAGAGCTGAAGTATTGGATAATGCTGCGAAGTGTATTCAACGCCGATTACAAACATATCATGCGCGCAAGGATTTTTTATTGATGCGTTCTACTGCAATTTCACTTCAAGCATACTGCAGAGGATGCCTTGCCCGAAAGTTTTATGTTGCGAAACGAGAAAGTGCTGCTGCCACTACGATACAGAAATATATTCGCAGGTGGTTCTCCAGGAATACTTATTTGGAGCTCTATAAAGCTGCTCTAACCATACAGTCCAGTATTCGTGGTTTTACGACTCGCAAAAGGTTTTTGCATGATAGAAGAAATAAAGCTGCGATATCAATTCAGGCTCAATGGAGGACATTCAAGGTTCGTACTGTTTTCCATCGCCACCAAGCTTCTATTATTTCAATACAATGTCGATGGAGGCAAAAGCTTGCAAAAAGGGAACTTCGAAGACTTAAACAGGAAGCTAATGAAGCTGGAGCATTGCGTTTAGCTAAGAACAAACTTGAGAAGCAGTTGGAAGATCTTACGTGGCGGTTGCATTTGGAGAAAAGACTGCGGGCTTCTAATGAAGAGGCTAAGTCAAACGAAATATTAAAATTGCAAAAGATGCTGGAATCTTTGAGTCTGGAGTTAGATGCAGCTAAATTTGCTGCAATCAATGAGTGCAACAAAAATGCTGTTCTGCAAAACCAAATGGATCTGTTGGCAAAGGAGAAGTATGCATTTGAAAGAGAAATTGTAGCAGTAGTTGAACTAAAGAAAGAAAATGCTTTCCTCAAGAGTGCTTTGGATGCCCTGGAGAAAAAGAACTCAGCTCTGGAGGTTAAGCTTGTTGAGGCACAAAAGGATGGCAGCCACACTGTTGAAAAGTTGCAGGAGGTTGAACAGAAATGCACTAAGCTGCAACATAATGTGAAAAGTCTCGAAGAAAAACTCTCAGTTTTAAAGGATGAGAATCACGTATTGCGGCAGAAAGCCTTAAGTGCAACTCCGAGGAGCACCCGACCCAATTTTGTAAGGGCATTATCTGAGAAATCTTCTGGTGCACTTATCCCTAATGCTGACAGGAAAACTCTCTTTGAGTCACCAACACCTACAAAACTGGTTGCACCATTTTCACAAGGCCTTTCCGAATCACGACGAACAAAATTAACTGTAGAGAGACACCAGGAAAACTATGAACTCCTTTCTAGGTGTATTAAAGAAAATTTGGGGTTTAAAGGTGGTAAGCCACTGGCCGCTTGCATCATCTACAAATGCCTTCTTAACTGGCATGCCTTCGAATCAGAACGAACAGTTATCTTTGACTACATAATTGAACGAATAAATGATGCCCTCAAGGTTGGGGATGAGAACATTGCCTTGTCATATTGGTTGTCAAACGCTTCTGCATTACTATGCCTCCTGCAAAGAAATATAAAGTCAAATGGATTTTTGAGTGCAGCTACTCAGCGTTCTGCAGGTTCTACTGGCTTAGCTAGCAGGATTTCTCAGGGACTAAAATCACCCTTCAAATATATTACTTTTGAAGATGGGATTTCTCATCTTGAAGCAAGATATCCGGCTATATTGTTTAAACAGCAATTAACTGCTTGTGTGGAGAAGATATTCGGCATGATTCGTGATAATTTGAAGAAAGAATTGTCTCCATTGTTGAGCTCATGTATTCAGGCACCCAAAGCTGCACGAGTACATGCTGGGAAGTCCTCTAAATCGCCTGGTGTTCATCAGCCATCTACAAGTAGTCCATGGGATAACATAATAAAGTTTTTGGATTCTTTGATGAGTCAATTACGTGAGAATCATGTACCGTCTTTCTTCATTCGTAAATTGATTACTCAGGTGTTCTCGTTCATCAATATTTCTCTTTTTAACAGCCTTCTTCTACGACGTGAATGTTGTACGTTTTCAAATGGCGAGTATGTGAAATCTGGTCTAGCTGAACTAGAGAAGTGGATTGGCAATGCAACAGATGAGTATTCAGGGACCTCTTGGCATGAACTAAACTATATAAGGCAATCTGTCGGGTTTCTGGTAATACATCAGAAGAGAAAGAAATCACTTGAAGAGATAAGACAGGATCTTTGCCCTGCATTGACTGTGAGACAAATTTATCGCATTAGTACTATGTATTGGGATGACAAATACGGCACTCAGAGTGTGTCAAACGAGGCAAGTGTACCGTCTTTCTTCATTCGTAAATTGATTACTCAGGTGTTCTCGTTCATCAATATTTCTCTTTTTAACAGCCTTCTTCTACGACGTGAATGTTGTACGTTTTCAAATGGCGAGTATGTGAAATCTGGTCTAGCTGAACTAGAGAAGTGGATTGGCAATGCAACAGATGAGTATTCAGGGACCTCTTGGCATGAACTAAACTATATAAGGCAATCTGTCGGGTTTCTGGTAATACATCAGAAGAGAAAGAAATCACTTGAAGAGATAAGACAGGATCTTTGCCCTGCATTGACTGTGAGACAAATTTATCGCATTAGTACTATGTATTGGGATGACAAATACGGCACTCAGACATCCCATTCTCTACTGAAGACATTGATATGGCTCTTCCCCCTATCGAACCTTCAGACATCGAACTTCCCAGTTTCCTGTCCGAATACACCTGTGCGCAATTTCTCACCGAGCAGCAAAAGTAGTCAGTTAGCTTACCACACGCGACCAAACGATCATTCTGACGGAATCTCATCCTTTACCCACCTGGGTTCGACTAATTGTTTCGATACACACCGCAAGTAA 4923 40.91 MSLRKGSKVWVEDRDSAWVAGEVIEFGGKQARVATITGKKVLALPEKLLPRDADEDEHGGVDDMTKLTYLNEPGVLYNLRRRYSLNDIYTYTGSILIAVNPFTKLPHLYNVHMMEQYKGAPFGELSPHVFAVADASYRAMISEGRSQSILVSGESGAGKTETTKLIMQYLTFVGGRASGNDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTNGRISGAAIRTYLLERSRVVQITNPERNYHCFYQLCASGRDAEKYKLDHPSHFRYLNQSKTYELDGVSNAEEYIRTRRAMDIVGISHEDQEAIFRTLAAILHLGNIEFLPGKEHDSSILKDEKSTFHLGVASNLLMCNSNLLVSALCTRSIHTHEGIIVKALDCEGAVASRDALAKTVYARLFDWLVDKINRSVGQDPNSQFQIGLLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIGLLDEACLFPRSTHETFSTKLFQNFHTHPRLERTKFSETDFTLSHYAGKVTYHTDTFLDKNRDYVVVEHCSLLASSRCTFVAGLFSSVPEESSRSSYKFSSVASRFKQQLQALMETLNSTEPHYVRCVKPNSLNKPQKFENPSILHQLRCGGVLEAVRISLAGYPSRRTYTEFIDRFGLLAPDLLDGSYDERLITEKILQKLKLKNFQLGRTKIFLRAGQIGILDARRAEVLDNAAKCIQRRLQTYHARKDFLLMRSTAISLQAYCRGCLARKFYVAKRESAAATTIQKYIRRWFSRNTYLELYKAALTIQSSIRGFTTRKRFLHDRRNKAAISIQAQWRTFKVRTVFHRHQASIISIQCRWRQKLAKRELRRLKQEANEAGALRLAKNKLEKQLEDLTWRLHLEKRLRASNEEAKSNEILKLQKMLESLSLELDAAKFAAINECNKNAVLQNQMDLLAKEKYAFEREIVAVVELKKENAFLKSALDALEKKNSALEVKLVEAQKDGSHTVEKLQEVEQKCTKLQHNVKSLEEKLSVLKDENHVLRQKALSATPRSTRPNFVRALSEKSSGALIPNADRKTLFESPTPTKLVAPFSQGLSESRRTKLTVERHQENYELLSRCIKENLGFKGGKPLAACIIYKCLLNWHAFESERTVIFDYIIERINDALKVGDENIALSYWLSNASALLCLLQRNIKSNGFLSAATQRSAGSTGLASRISQGLKSPFKYITFEDGISHLEARYPAILFKQQLTACVEKIFGMIRDNLKKELSPLLSSCIQAPKAARVHAGKSSKSPGVHQPSTSSPWDNIIKFLDSLMSQLRENHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIGNATDEYSGTSWHELNYIRQSVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEASVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIGNATDEYSGTSWHELNYIRQSVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQTSHSLLKTLIWLFPLSNLQTSNFPVSCPNTPVRNFSPSSKSSQLAYHTRPNDHSDGISSFTHLGSTNCFDTHRK 1640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1949703 1975994 - CmoCh05G004240.1 Cmo05g00424 382559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00424 1640 Pfam Myosin head (motor domain) 61 717 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g00424 1640 ProSiteProfiles IQ motif profile. 755 784 IPR000048 GO:0005515
Cmo05g00424 1640 Gene3D Myosin VI head, motor domain, U50 subdomain 308 598 - -
Cmo05g00424 1640 Coils Coil 972 1006 - -
Cmo05g00424 1640 ProSiteProfiles Dilute domain profile. 1159 1457 IPR002710 -
Cmo05g00424 1640 SMART iq_5 850 872 IPR000048 GO:0005515
Cmo05g00424 1640 SMART iq_5 731 753 IPR000048 GO:0005515
Cmo05g00424 1640 SMART iq_5 802 824 IPR000048 GO:0005515
Cmo05g00424 1640 SMART iq_5 827 849 IPR000048 GO:0005515
Cmo05g00424 1640 SMART iq_5 754 776 IPR000048 GO:0005515
Cmo05g00424 1640 SMART iq_5 779 801 IPR000048 GO:0005515
Cmo05g00424 1640 Gene3D - 663 730 - -
Cmo05g00424 1640 ProSiteProfiles Dilute domain profile. 1454 1583 IPR002710 -
Cmo05g00424 1640 SMART DIL_2 1333 1440 IPR002710 -
Cmo05g00424 1640 SMART DIL_2 1457 1564 IPR002710 -
Cmo05g00424 1640 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g00424 1640 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g00424 1640 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g00424 1640 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g00424 1640 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g00424 1640 Gene3D - 249 306 - -
Cmo05g00424 1640 PANTHER MYOSIN 1449 1567 - -
Cmo05g00424 1640 PANTHER MYOSIN 3 1448 - -
Cmo05g00424 1640 Coils Coil 1014 1048 - -
Cmo05g00424 1640 PANTHER PROTEIN OPAQUE1-LIKE 1449 1567 - -
Cmo05g00424 1640 ProSiteProfiles IQ motif profile. 851 880 IPR000048 GO:0005515
Cmo05g00424 1640 Pfam DIL domain 1458 1561 IPR002710 -
Cmo05g00424 1640 Pfam DIL domain 1334 1437 IPR002710 -
Cmo05g00424 1640 Coils Coil 864 908 - -
Cmo05g00424 1640 CDD MYSc_Myo11 73 717 IPR036018 -
Cmo05g00424 1640 CDD MyosinXI_CBD 1110 1447 IPR037975 GO:0007015
Cmo05g00424 1640 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cmo05g00424 1640 PANTHER PROTEIN OPAQUE1-LIKE 3 1448 - -
Cmo05g00424 1640 ProSiteProfiles IQ motif profile. 780 809 IPR000048 GO:0005515
Cmo05g00424 1640 ProSiteProfiles IQ motif profile. 828 857 IPR000048 GO:0005515
Cmo05g00424 1640 Gene3D Kinesin motor domain 62 659 IPR036961 -
Cmo05g00424 1640 SMART MYSc_2a 53 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g00424 1640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 779 IPR027417 -
Cmo05g00424 1640 ProSiteProfiles Myosin motor domain profile. 59 729 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g00424 1640 Pfam IQ calmodulin-binding motif 830 848 IPR000048 GO:0005515
Cmo05g00424 1640 Pfam IQ calmodulin-binding motif 759 773 IPR000048 GO:0005515
Cmo05g00424 1640 Pfam IQ calmodulin-binding motif 805 823 IPR000048 GO:0005515
Cmo05g00424 1640 Pfam IQ calmodulin-binding motif 782 800 IPR000048 GO:0005515
Cmo05g00424 1640 ProSiteProfiles IQ motif profile. 803 832 IPR000048 GO:0005515
Cmo05g00424 1640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 783 878 IPR027417 -
Cmo05g00424 1640 Gene3D - 435 620 - -
Cmo05g00424 1640 Gene3D - 731 780 - -
Cmo05g00424 1640 Gene3D - 829 879 - -
Cmo05g00424 1640 Gene3D - 781 828 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00424 Cmo-Chr5:1949703 Cmo11g00730 Cmo-Chr11:3538325 2.89E-51 dispersed
Cmo05g00424 Cmo-Chr5:1949703 Cmo12g01162 Cmo-Chr12:10512698 1.31E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00424 K10357 - csv:101210527 2701.78