Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00427 ATGGGTCCAGCAGTTCTGAGTTCACACACCAATGGCTTCTCCAAATCAGTAGATCGAAACTTCGAAGAGAAAAACAATTACATCAATGGAGATTCTTCTCATGAATCGGTAATCAATACTGTTAATGGCAACGATTGCTATTGGTTCGAGGAAATCATCGACGAAAATCTCAAATGGTCTTTTGCTCTGAATAGCGTTCTGCAGAAAGGAACCAGCGAGTTTCAGGATATTGCGCTATTAGATACCAAGTGTTTCGGAAAAGCTTTGATGATCGACGGGAAGATGCAGAGCGCTGAAGCCGATGAATTCGTGTATCATGAATGCTTGATTCATCCCGCGCTATTATGCCATTCCAACCCGAAAACTGTATTCATAATGGGAGGTGGGGAAGGATCAGCAGCCAGAGAAGTCCTCAAACACAAATCAATAGAAAAAGTTGTCATGTGCGATATTGATCAGGATGTAGTGGATTTCTGCCGTAAATATTTGACTGTGAACCAGGAGACATTTTGTCACAAAAAACTTCATCTTGTAATAAACGACGCCAAGGCGGAATTGGAAAAGAGAAAGGAGAAATATGATATAATTATAGGAGACCTAGCAGACCCTGTTAAAGATGGGCCTTGCTACAAGCTCTACACCAAATCCTTCTACCAGGAGATCGTCAAGCCAAAGCTCCACGACAATGGCATCTTCGTAACTCAGGCAGGACCAGCCGGAATTTTCACCCACAAAGAGGTTTTTACCTCCATATATAACACAATCAAACAGACATTCAACTATGTGATTGCTTACACGGCTTACATACCATCTTTTGCTGACACATGGGGATGGGTTATGGCATCAGATCATCCTTTCTGTATAAAATCTGAGGAATTGGATAAGAGAATTGAAGATAGAATCGATGGGGAGTTGCTCTATTTAACTGGTCCTTCCATTGTGTCCTCCACCATTATCAACAAGATGGTTTCTTTAGCGTTGTTGAACGAAACTCATATCTATACTGAAGCGACTGCAAAATTCATACATGGTCAAGGAGTTGGATTCAAGCAACAGAATGGCAGGAGTTGTCGTGGTGTATAA 1083 41.55 MGPAVLSSHTNGFSKSVDRNFEEKNNYINGDSSHESVINTVNGNDCYWFEEIIDENLKWSFALNSVLQKGTSEFQDIALLDTKCFGKALMIDGKMQSAEADEFVYHECLIHPALLCHSNPKTVFIMGGGEGSAAREVLKHKSIEKVVMCDIDQDVVDFCRKYLTVNQETFCHKKLHLVINDAKAELEKRKEKYDIIIGDLADPVKDGPCYKLYTKSFYQEIVKPKLHDNGIFVTQAGPAGIFTHKEVFTSIYNTIKQTFNYVIAYTAYIPSFADTWGWVMASDHPFCIKSEELDKRIEDRIDGELLYLTGPSIVSSTIINKMVSLALLNETHIYTEATAKFIHGQGVGFKQQNGRSCRGV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1987749 1991197 + CmoCh05G004270.1 Cmo05g00427 382562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00427 360 Pfam Spermidine synthase tetramerisation domain 47 99 IPR035246 -
Cmo05g00427 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 46 316 IPR029063 -
Cmo05g00427 360 Pfam Spermine/spermidine synthase domain 102 282 - -
Cmo05g00427 360 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 38 350 - -
Cmo05g00427 360 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 46 283 IPR030374 -
Cmo05g00427 360 Hamap Polyamine aminopropyltransferase [speE]. 47 319 IPR001045 GO:0003824
Cmo05g00427 360 Gene3D Vaccinia Virus protein VP39 99 351 IPR029063 -
Cmo05g00427 360 PANTHER BNAA02G04280D PROTEIN 38 350 - -
Cmo05g00427 360 CDD AdoMet_MTases 127 235 - -
Cmo05g00427 360 Gene3D Spermidine synthase, tetramerisation domain 47 98 IPR037163 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00427 K18787 ACL5; thermospermine synthase [EC:2.5.1.79] - csv:101210030 640.573
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00427 Cmo12g00250 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00427 Cmo-Chr5:1987749 Cmo06g01418 Cmo-Chr6:10321581 3.59E-160 dispersed
Cmo05g00427 Cmo-Chr5:1987749 Cmo04g01804 Cmo-Chr4:9088749 5.73E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g146 . . . . Bpe02g01556 . . . Cmo05g00427 Cmo12g00250 . . . . . . . Bhi04g01088 . . . . . . . . . . . . . . . Cone17ag0940 Cone20ag0283 . . . . . Blo18g00262 Bda01g01344 Bda13g01302 . . Bma01g00913 . . . . . . . Car05g00351 Cpe11g00355 . . . . . . . . Cla08g00991 Cam08g1437 Cec08g1016 Cco08g1139 Clacu08g1142 . Cre08g0927 Lsi08g00836 . Chy03g01199 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002288 2 3 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 4 2 2 2 2 2 2 2 1 2 6 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00427 Cmo_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.500521