Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00430 | ATGGACGGGGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTGATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCACTGGGTATAAACTTTGCTAGAGACGGGATGCAAGAAAAGGATTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCCGAACCTCAAATAAAAAGTGCGAAAGCTGTTCAATCGAAAGACGAGGATGAGGAAGGCTTGGAAGAGGAAGACGAAGAAGAACATGGAGAAACACTTTGCGGAGCTTGCGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCAGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGCGAATCCGACCCTGA | 762 | 43.57 | MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSAKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2007974 | 2012817 | + | CmoCh05G004300.1 | Cmo05g00430 | 382565 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00430 | 253 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 4 | 253 | - | - | |
Cmo05g00430 | 253 | Pfam | PHD-finger | 200 | 249 | IPR019787 | - | |
Cmo05g00430 | 253 | SUPERFAMILY | FYVE/PHD zinc finger | 189 | 250 | IPR011011 | - | |
Cmo05g00430 | 253 | SMART | PHD_3 | 199 | 247 | IPR001965 | - | |
Cmo05g00430 | 253 | MobiDBLite | consensus disorder prediction | 145 | 174 | - | - | |
Cmo05g00430 | 253 | ProSitePatterns | Zinc finger PHD-type signature. | 200 | 246 | IPR019786 | - | |
Cmo05g00430 | 253 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 248 | IPR013083 | - | |
Cmo05g00430 | 253 | CDD | PHD_AL_plant | 199 | 249 | IPR044104 | - | |
Cmo05g00430 | 253 | MobiDBLite | consensus disorder prediction | 145 | 193 | - | - | |
Cmo05g00430 | 253 | ProSiteProfiles | Zinc finger PHD-type profile. | 197 | 249 | IPR019787 | - | |
Cmo05g00430 | 253 | PANTHER | CPG BINDING PROTEIN | 4 | 253 | IPR045104 | GO:0006355|GO:0042393 | |
Cmo05g00430 | 253 | Pfam | Alfin | 11 | 139 | IPR021998 | GO:0006355|GO:0042393 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00430 | Cmo12g00597 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00430 | Cmo-Chr5:2007974 | Cmo12g01349 | Cmo-Chr12:11655177 | 3.37E-139 | dispersed | |
Cmo16g00813 | Cmo-Chr16:4203499 | Cmo05g00430 | Cmo-Chr5:2007974 | 6.08E-18 | dispersed | |
Cmo12g00597 | Cmo-Chr12:3678268 | Cmo05g00430 | Cmo-Chr5:2007974 | 1.21E-160 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9812 | PF12165 | Alfin | 2.10E-69 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00430 | - | - | csv:101208889 | 462.996 |