Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00430 ATGGACGGGGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTGATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTCTGCCTTTACGGATTTCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCGGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCACTGGGTATAAACTTTGCTAGAGACGGGATGCAAGAAAAGGATTGGCTATCCTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCCGAACCTCAAATAAAAAGTGCGAAAGCTGTTCAATCGAAAGACGAGGATGAGGAAGGCTTGGAAGAGGAAGACGAAGAAGAACATGGAGAAACACTTTGCGGAGCTTGCGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCAGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGCGAATCCGACCCTGA 762 43.57 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKSAKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2007974 2012817 + CmoCh05G004300.1 Cmo05g00430 382565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00430 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 253 - -
Cmo05g00430 253 Pfam PHD-finger 200 249 IPR019787 -
Cmo05g00430 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Cmo05g00430 253 SMART PHD_3 199 247 IPR001965 -
Cmo05g00430 253 MobiDBLite consensus disorder prediction 145 174 - -
Cmo05g00430 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Cmo05g00430 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Cmo05g00430 253 CDD PHD_AL_plant 199 249 IPR044104 -
Cmo05g00430 253 MobiDBLite consensus disorder prediction 145 193 - -
Cmo05g00430 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Cmo05g00430 253 PANTHER CPG BINDING PROTEIN 4 253 IPR045104 GO:0006355|GO:0042393
Cmo05g00430 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00430 Cmo12g00597 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00430 Cmo-Chr5:2007974 Cmo12g01349 Cmo-Chr12:11655177 3.37E-139 dispersed
Cmo16g00813 Cmo-Chr16:4203499 Cmo05g00430 Cmo-Chr5:2007974 6.08E-18 dispersed
Cmo12g00597 Cmo-Chr12:3678268 Cmo05g00430 Cmo-Chr5:2007974 1.21E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9812 PF12165 Alfin 2.10E-69 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00430 - - csv:101208889 462.996