Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00431 ATGGCCGCAGACAATGGAAGTAAGAGGCTTTACGAAGCCGCCATTGAAGGCAACGTAACAACGTTGTTAGAGCTGCTCCGACAGGATCCTATGTTGCTGGCCAGAGTTAACCTCAACGACTTCAACGAGACGCCTCTACACGTGGCGGCTCTTCTTGGACACGTCAGATTTGCGGATGAGATTCTGAAGCGAAGGCCTCAGCTGGCTAAGGAGTTGGATTCCCGCCGTTTTTCCGCCCTCCACTTGGCCGCCGCCGAAGGGTTTGTGGAAATTGTGAAACTTCTGCTGCGAGTTGATGCTGATATGTGCTTTGTCTGCAACCAAGATGGCCGGAACGCTATCCACCTCGCCGCCGTTAGAGGCCGGCTTGATGTCTTGGCTGAGCTCGTCCGTGTCCGACCGGCTGCTGCTCGGATGGCGGTGGACGGCGGCGGAACGGTGTTGCATTTGTGTGTGAAGTATAACCAGGTGGAAGCGCTGAAGAAGCTGATTGAAACTGTGGCTGTGGATGATAGTCACTTTGTTAATGCTCAGGATGATTATGGCTTCACTATCCTCCATCTTGCCGTCTCCATGAAACAACTTCAGGCTGTGGAGTATCTAATCAACCATACAAGAATCAAAGTAAATGCCAAAACCTCAAATGGGTTAACAGCTCTGGACATTCTAACTCAAAGCCATAGAGATCTAAAGGACATGGACATCGCAGAGACTCTCACAGCTGCCAATGCCATCCGAACCACACCAAAGAAGCCGTCGTCGTTGTCGCGGTCGTCTTCTTCACCTTCTTCCTGTGTCAGCAAAACGGAAAAGACTCAATCTTGGAAATGGCTTCTCTCCGCCGTCTTCCACAACGGAGATTGGTGGTTCTTTAACCAGAAAAGCGAGTGGCTGAGGAAGCAAGATTCACTAATGGTGGTGGCATCACTAATAGCGACAATGGCTTTTCAAGCCGGAGTCAACCCTCCAGGTGGCATTTGGCAAGACGACAAAGCCTCAGGGAACCCATATCAGCCGGCCGGAACGTCGATATTCGCCGGAAAACACCTACGAACCTATAATAAGTTTCTGGTGTTTAACACAGTGGGATTCATGACTTCCCTAATTGCAATTCTGATGATAATCACTGGGTTGCCGGAGAAACGCATTTTCATGAGGGTTTTGATCGTTACGATGTGGATTGCAGTGAGCTCCATGGCTTATACTTATGGATACTCCATTAGGTTCTTCACTCCACGAGCACCAAAACTCTCAGGCTCCGGTACTCCGTCGGGAGCCGACTCCGTCATCTTTTTGATTGCCATTTTGGTGGCCATAGTGGCAACTTCTTCAATCGGTCTGTTCTTGATTGGGAAGCTTTTCTACGTTCATTCTCGACAGAATAAGTCTACTAAGCACCCAGTCCCATCCGAACAGATTTAA 1422 49.58 MAADNGSKRLYEAAIEGNVTTLLELLRQDPMLLARVNLNDFNETPLHVAALLGHVRFADEILKRRPQLAKELDSRRFSALHLAAAEGFVEIVKLLLRVDADMCFVCNQDGRNAIHLAAVRGRLDVLAELVRVRPAAARMAVDGGGTVLHLCVKYNQVEALKKLIETVAVDDSHFVNAQDDYGFTILHLAVSMKQLQAVEYLINHTRIKVNAKTSNGLTALDILTQSHRDLKDMDIAETLTAANAIRTTPKKPSSLSRSSSSPSSCVSKTEKTQSWKWLLSAVFHNGDWWFFNQKSEWLRKQDSLMVVASLIATMAFQAGVNPPGGIWQDDKASGNPYQPAGTSIFAGKHLRTYNKFLVFNTVGFMTSLIAILMIITGLPEKRIFMRVLIVTMWIAVSSMAYTYGYSIRFFTPRAPKLSGSGTPSGADSVIFLIAILVAIVATSSIGLFLIGKLFYVHSRQNKSTKHPVPSEQI 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2014122 2016953 - CmoCh05G004310.1 Cmo05g00431 382566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00431 473 PANTHER - 7 413 - -
Cmo05g00431 473 Gene3D - 1 295 IPR036770 -
Cmo05g00431 473 ProSiteProfiles Ankyrin repeat region circular profile. 75 102 - -
Cmo05g00431 473 ProSiteProfiles Ankyrin repeat profile. 75 102 IPR002110 GO:0005515
Cmo05g00431 473 PANTHER CASKIN 7 413 - -
Cmo05g00431 473 Pfam Ankyrin repeats (3 copies) 144 212 IPR002110 GO:0005515
Cmo05g00431 473 Pfam Ankyrin repeats (3 copies) 77 130 IPR002110 GO:0005515
Cmo05g00431 473 MobiDBLite consensus disorder prediction 246 267 - -
Cmo05g00431 473 SUPERFAMILY Ankyrin repeat 10 226 IPR036770 -
Cmo05g00431 473 Pfam Domain of unknown function 299 407 IPR026961 -
Cmo05g00431 473 SMART ANK_2a 41 70 IPR002110 GO:0005515
Cmo05g00431 473 SMART ANK_2a 75 104 IPR002110 GO:0005515
Cmo05g00431 473 SMART ANK_2a 143 174 IPR002110 GO:0005515
Cmo05g00431 473 SMART ANK_2a 181 211 IPR002110 GO:0005515
Cmo05g00431 473 SMART ANK_2a 109 138 IPR002110 GO:0005515
Cmo05g00431 473 SMART ANK_2a 5 34 IPR002110 GO:0005515
Cmo05g00431 473 SMART ANK_2a 215 248 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00431 - - - bhj:120075898 649.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00431 Cmo-Chr5:2014122 Cmo09g01309 Cmo-Chr9:11697590 3.22E-46 dispersed
Cmo05g00433 Cmo-Chr5:2027545 Cmo05g00431 Cmo-Chr5:2014122 2.27E-16 dispersed
Cmo05g00434 Cmo-Chr5:2031802 Cmo05g00431 Cmo-Chr5:2014122 2.68E-19 dispersed
Cmo19g00402 Cmo-Chr19:4710159 Cmo05g00431 Cmo-Chr5:2014122 1.47E-10 dispersed
Cmo05g00431 Cmo-Chr5:2014122 Cmo05g00432 Cmo-Chr5:2021021 6.85E-35 tandem
Cmo01g00888 Cmo-Chr1:4846164 Cmo05g00431 Cmo-Chr5:2014122 2.70E-17 transposed
Cmo12g00043 Cmo-Chr12:235615 Cmo05g00431 Cmo-Chr5:2014122 5.98E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00431 Cmo_Chr05 FPKM 20.318359 21.032726 19.265987 18.482904 21.065054 20.618168 19.767082 11.863684 11.041727 11.756634