Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00439 ATGCCTCCGCATCCACCGGAAGATGGGATTCCCTTGAACACCACGGCGGTGGCCATTGACAAGGATAAGAACAGCCAACACGCCGTCCGTTGGGCTATTGATCATCTGGTCATAAACAACCCGCTTATCATTCTCATCCATGTTAGGCATAAAGCTTATCAAAATCATCAGGACGCGGGCGATTCTGAAAATGGTGAAACTGATGCGCAGCAGCTGTTTGTTCCCTATCGTGGATATTGTGCTCGTAAAGGGGTTCAGCTGAAGGAGGTTGTTCTTGACGAACCTGATATTCCCAAAGCGCTCGTTGACTACGTTCACAAGAATTGTGTCAACAATTTTGTAGTTGGAGCTTCAACAAGGAGTGCTCTAGCAAGGAAATTTAAAGGCCCTGATGTTCCAACCAGCGTAATAAAAATTGCCCCAGAATTTTGTTCTGTGTACGTAATATCAAAAGGGAAGATAATATCTGCCAGGGCAGCTCTTCGGCCAGTGGCTAATACTGCCATGCCACCGAAACAACCGTCGCCGCTTGGAGTTCAGCCAATTGCTCTACCAGAAAGCAGCAGTGAACAAGAAAACGGAGCCAAAGGGCAACCAGCGAAGGAAGGATGGAAATGTGCAGGTTCAGATAGAATGCTCAACGAAAGAAATGGTGGAAAGCCAGCAAAAGCGTTGACCCGTGAGAGACCGAAAACTTCTCCGTCTAATATATCAATAGAAAACGTAGAGGTTTCGAATCGAGGGCCTAGGTCTTCATTTAGCCGTGATTCAATCTCTGATGACAATCTGTTGAATGCACAGATGCCTTTTGGTTCATTGGACGTGAATGCTCAAAATTTAGATTTCAGTACTACCTCAAATTTGTCAACGGACTCTGCTTCCTCACAATCTACTCGGGAACTAGAGGCTGAGATGAAAAGATTGAAGTTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGTAAAGAGGCAATCTCAGCCAAGAACAAGGCGAGAGAACTTAGTCAATGGAAGCAAGACGAGGCGCGTAAGTTTGAGGAAGTCAGGCTAGCTGAAGAGGCCGCTCTAGCTATGGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCTGAAATCAAGGCCAAACGAGAGGCAGAAGAGAAAAAACGAGCATTGTGTGCTTTAGCTCAGAATGACGTCCGATATAGAAAATACACTATAGAGGAGATTGAAGAGTCTACTGAAAGGTTCTCTGAAAAATTGAAGGTTGGAGAAGGTGGATACGGTCCTGTTTATGTAGGCAAACTTGATCATACAGATGTTGCGATTAAAGTTTTAAGACCCGGCGCTGCTCAAGGACGGAAGCAATTCCAGCAAGAGGTGGAGGTCCTTTGTTCTATTAGACATCCAAACATGGTCCTTCTTCTTGGGGCATGCCCCGAGTATGGTTGCTTAGTATATGAGTACATGCAGAATGGGAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGATTCAAAATATCTGCTGAAATTGCTACTGCACTCCTTTTTCTTCACCAAGCAAAGCCAGATCCGCTCGTGCATAGGGACCTTAAACCAGCTAACATTCTCTTGGACCGCAATTTTGTGAGCAAAATCAGTGATGTTGGCCTGGCCCGGTTAGTCCCACCTTCTGTAGTTGATCAAGTCACTCAATATCACCTGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCTGAGTATCAACAAACAGGAAAGTTAACGACGAAATCGGATATTTACTCGTTTGGAATAATGTTACTTCAAATCATTACTGCCAAGCCTCCAATGGGTCTGGCTCACCATGTGCAAAGGGCTATTGAGAAAGAGAGGTTTGATGAGATGCTGGATCCTACAATTCCAGATTGTCCATTGGAGGAGGCTATAAGCTTTGCAAAACTGGCATTGAATTGCGCTGAACTGAGGAAGAGAGACAGGCCAGATCTTGGAACAGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATCTTGGGAGGAGTTCTGACAAACGTGAAAGCCGGAGTCTACTTCTACGCTCTTCTGCATCAAGTTCCAATTCGAGGCCACAGTCATCAAATGAGGATTCCACCAGGAAAAAGGATATACTTCTTAAGCTTCATCCATGGAGAATTTCTCCAAAAACCCTTCATTTCTCTTCCCTTTTCATTATTCTGATCTTTCACCTCTCCGGAGCTGCGGCGGCGTCGGCGTCTGAGTCGAGGTGGTACTTCCGGTTAGCCTTCTCTGTATCCCCGTCATATGCGCGCCGCCGCCACCCCCGCCATAGCCTTCGCCAGTGCCCCATGTACCGCCGCTGGCTTACTTCCCACTCATTTCATCCCCACCTCGACAGAACCCATCTCCGCCGCCTCCCGCTATCCACCGCCGCCGCTGGTGCTGATTCCGGGAAAATTTATCTTCACTCCTCTCGTTCCCTGTTTAAATGGAGATTGTTCACCTGGTTAAATGGACATCATTAG 2592 46.57 MPPHPPEDGIPLNTTAVAIDKDKNSQHAVRWAIDHLVINNPLIILIHVRHKAYQNHQDAGDSENGETDAQQLFVPYRGYCARKGVQLKEVVLDEPDIPKALVDYVHKNCVNNFVVGASTRSALARKFKGPDVPTSVIKIAPEFCSVYVISKGKIISARAALRPVANTAMPPKQPSPLGVQPIALPESSSEQENGAKGQPAKEGWKCAGSDRMLNERNGGKPAKALTRERPKTSPSNISIENVEVSNRGPRSSFSRDSISDDNLLNAQMPFGSLDVNAQNLDFSTTSNLSTDSASSQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAMAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEIKAKREAEEKKRALCALAQNDVRYRKYTIEEIEESTERFSEKLKVGEGGYGPVYVGKLDHTDVAIKVLRPGAAQGRKQFQQEVEVLCSIRHPNMVLLLGACPEYGCLVYEYMQNGSLEDRLFRRGNTPPLSWRRRFKISAEIATALLFLHQAKPDPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVVDQVTQYHLTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFDEMLDPTIPDCPLEEAISFAKLALNCAELRKRDRPDLGTVIVPELNRLRDLGRSSDKRESRSLLLRSSASSSNSRPQSSNEDSTRKKDILLKLHPWRISPKTLHFSSLFIILIFHLSGAAAASASESRWYFRLAFSVSPSYARRRHPRHSLRQCPMYRRWLTSHSFHPHLDRTHLRRLPLSTAAAGADSGKIYLHSSRSLFKWRLFTWLNGHH 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2045072 2051792 + CmoCh05G004390.1 Cmo05g00439 382574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00439 863 Gene3D HUPs 12 151 IPR014729 -
Cmo05g00439 863 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Cmo05g00439 863 ProSiteProfiles Protein kinase domain profile. 432 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00439 863 MobiDBLite consensus disorder prediction 167 259 - -
Cmo05g00439 863 SMART serkin_6 432 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00439 863 Pfam Universal stress protein family 17 141 IPR006016 -
Cmo05g00439 863 Pfam Protein tyrosine and serine/threonine kinase 437 690 IPR001245 GO:0004672|GO:0006468
Cmo05g00439 863 SUPERFAMILY Protein kinase-like (PK-like) 416 690 IPR011009 -
Cmo05g00439 863 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 14 729 - -
Cmo05g00439 863 Coils Coil 298 318 - -
Cmo05g00439 863 CDD STKc_IRAK 438 698 - -
Cmo05g00439 863 Gene3D Phosphorylase Kinase; domain 1 410 504 - -
Cmo05g00439 863 MobiDBLite consensus disorder prediction 709 734 - -
Cmo05g00439 863 CDD STK_N 14 152 - -
Cmo05g00439 863 Coils Coil 358 404 - -
Cmo05g00439 863 PANTHER OS02G0152300 PROTEIN 14 729 - -
Cmo05g00439 863 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 149 - -
Cmo05g00439 863 MobiDBLite consensus disorder prediction 714 729 - -
Cmo05g00439 863 MobiDBLite consensus disorder prediction 229 259 - -
Cmo05g00439 863 Gene3D Transferase(Phosphotransferase) domain 1 505 719 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00439 Cmo12g00590 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00439 Cmo-Chr5:2045072 Cmo05g00647 Cmo-Chr5:3265098 0 dispersed
Cmo12g00230 Cmo-Chr12:1521191 Cmo05g00439 Cmo-Chr5:2045072 0 wgd
Cmo12g00590 Cmo-Chr12:3618660 Cmo05g00439 Cmo-Chr5:2045072 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74345 PF07714 PK_Tyr_Ser-Thr 3.00E-41 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00439 - - csv:101203326 1158.67