Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00440 | ATGGCTGGTATGGCAGCTGAAGGAACCCAATTTGATGCACGTCAATTTGATTCCAAGATGAATGATTTGCTTGGGGGAGATGGCCAAGACTTTTTCACCTCATATGATGAAGTCTATGAGAGTTTTGATTCCATGGGTTTGCAGGAGAATCTCTTAAGAGGAATATATGCTTATGGTTTTGAGAAGCCTTCTGCAATTCAGCAAAGAGGTATTGTTCCATTCTGTAAGGGACTTGATGTTATCCAACAGGCACAATCTGGAACTGGAAAAACAGCCACTTTCTGCTCTGGAATTTTGCAGCAGCTAGATTATGGCCTAGTTGATTGCCAGGCGTTAGTTCTCGCACCCACCCGAGAACTGGCACAACAGATCGAAAAGGTTATGCGCGCATTAGGTGATTATCTTGGTGTCAAGGTCCATGCTTGTGTTGGTGGAACCAGTGTTCGTGAAGATCAACGCATTCTCTCAAGTGGTGTCCATGTCGTTGTTGGCACCCCTGGTCGTGTGTTTGATATGCTGCGGAGGCAGTCACTTCGCCCCGATCACATTAAGATGTTTGTGCTGGATGAAGCTGATGAAATGCTTTCACGAGGGTTCAAGGATCAGATTTACGATATTTTCCAGCTTCTTCCTCCAAAGATTCAGGTTGGGGTTTTCTCTGCTACAATGCCCCCTGAAGCTCTCGAGATAACAAGGAAATTTATGAATAAACCCGTGAGAATTTTGGTGAAACGTGATGAGCTCACCCTTGAGGGTATCAAGCAATTCTATGTCAATGTCGATAAAGAAGAGTGGAAACTCGAGACTCTTTGCGACCTTTATGAAACTCTTGCAATTACCCAGAGTGTCATTTTTGTGAATACCAGGCGCAAAGTTGATTGGCTGACCGATAAGATGCGCAGCCGTGACCACACTGTTTCTGCCACACATGGAGACATGGACCAAAACACTAGAGATATCATCATGCGGGAGTTTCGATCTGGTTCATCCCGTGTTCTCATTACTACTGATCTCTTGGCTAGGGGAATCGATGTCCAACAAGTTTCCCTCGTCATAAATTTTGATCTTCCTACTCAGCCAGAGAATTACCTCCATCGAATCGGTCGTAGTGGACGATTCGGAAGGAAGGGTGTTGCCATCAATTTTGTGACCACAGAGGATGAAAGAATGCTGTTTGACATCCAAAAGTTCTACAATGTCATGGTCGAGGAGCTGCCAGCAAACGTTGCCGATCTCATTTGA | 1242 | 45.01 | MAGMAAEGTQFDARQFDSKMNDLLGGDGQDFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVMVEELPANVADLI | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2056656 | 2058465 | + | CmoCh05G004400.1 | Cmo05g00440 | 382575 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00440 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 413 | IPR001650 | - | |
Cmo05g00440 | 413 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | IPR000629 | - | |
Cmo05g00440 | 413 | SMART | ultradead3 | 59 | 256 | IPR014001 | - | |
Cmo05g00440 | 413 | CDD | DEADc_EIF4A | 45 | 242 | - | - | |
Cmo05g00440 | 413 | Pfam | Helicase conserved C-terminal domain | 266 | 374 | IPR001650 | - | |
Cmo05g00440 | 413 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-2 | 23 | 413 | - | - | |
Cmo05g00440 | 413 | PANTHER | RNA HELICASE | 23 | 413 | - | - | |
Cmo05g00440 | 413 | Pfam | DEAD/DEAH box helicase | 65 | 226 | IPR011545 | GO:0003676|GO:0005524 | |
Cmo05g00440 | 413 | CDD | SF2_C_DEAD | 253 | 383 | - | - | |
Cmo05g00440 | 413 | SMART | helicmild6 | 293 | 374 | IPR001650 | - | |
Cmo05g00440 | 413 | Gene3D | - | 249 | 413 | IPR027417 | - | |
Cmo05g00440 | 413 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 109 | 394 | IPR027417 | - | |
Cmo05g00440 | 413 | Gene3D | - | 30 | 248 | IPR027417 | - | |
Cmo05g00440 | 413 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 40 | 68 | IPR014014 | GO:0003724 | |
Cmo05g00440 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | IPR014001 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00057 | Cmo-Chr1:200325 | Cmo05g00440 | Cmo-Chr5:2056656 | 0 | dispersed | |
Cmo05g00440 | Cmo-Chr5:2056656 | Cmo17g00686 | Cmo-Chr17:7014859 | 0 | dispersed | |
Cmo05g00440 | Cmo-Chr5:2056656 | Cmo14g01286 | Cmo-Chr14:10771250 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00440 | K03257 | - | jre:109008881 | 793.112 |