Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00440 ATGGCTGGTATGGCAGCTGAAGGAACCCAATTTGATGCACGTCAATTTGATTCCAAGATGAATGATTTGCTTGGGGGAGATGGCCAAGACTTTTTCACCTCATATGATGAAGTCTATGAGAGTTTTGATTCCATGGGTTTGCAGGAGAATCTCTTAAGAGGAATATATGCTTATGGTTTTGAGAAGCCTTCTGCAATTCAGCAAAGAGGTATTGTTCCATTCTGTAAGGGACTTGATGTTATCCAACAGGCACAATCTGGAACTGGAAAAACAGCCACTTTCTGCTCTGGAATTTTGCAGCAGCTAGATTATGGCCTAGTTGATTGCCAGGCGTTAGTTCTCGCACCCACCCGAGAACTGGCACAACAGATCGAAAAGGTTATGCGCGCATTAGGTGATTATCTTGGTGTCAAGGTCCATGCTTGTGTTGGTGGAACCAGTGTTCGTGAAGATCAACGCATTCTCTCAAGTGGTGTCCATGTCGTTGTTGGCACCCCTGGTCGTGTGTTTGATATGCTGCGGAGGCAGTCACTTCGCCCCGATCACATTAAGATGTTTGTGCTGGATGAAGCTGATGAAATGCTTTCACGAGGGTTCAAGGATCAGATTTACGATATTTTCCAGCTTCTTCCTCCAAAGATTCAGGTTGGGGTTTTCTCTGCTACAATGCCCCCTGAAGCTCTCGAGATAACAAGGAAATTTATGAATAAACCCGTGAGAATTTTGGTGAAACGTGATGAGCTCACCCTTGAGGGTATCAAGCAATTCTATGTCAATGTCGATAAAGAAGAGTGGAAACTCGAGACTCTTTGCGACCTTTATGAAACTCTTGCAATTACCCAGAGTGTCATTTTTGTGAATACCAGGCGCAAAGTTGATTGGCTGACCGATAAGATGCGCAGCCGTGACCACACTGTTTCTGCCACACATGGAGACATGGACCAAAACACTAGAGATATCATCATGCGGGAGTTTCGATCTGGTTCATCCCGTGTTCTCATTACTACTGATCTCTTGGCTAGGGGAATCGATGTCCAACAAGTTTCCCTCGTCATAAATTTTGATCTTCCTACTCAGCCAGAGAATTACCTCCATCGAATCGGTCGTAGTGGACGATTCGGAAGGAAGGGTGTTGCCATCAATTTTGTGACCACAGAGGATGAAAGAATGCTGTTTGACATCCAAAAGTTCTACAATGTCATGGTCGAGGAGCTGCCAGCAAACGTTGCCGATCTCATTTGA 1242 45.01 MAGMAAEGTQFDARQFDSKMNDLLGGDGQDFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVMVEELPANVADLI 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2056656 2058465 + CmoCh05G004400.1 Cmo05g00440 382575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00440 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Cmo05g00440 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Cmo05g00440 413 SMART ultradead3 59 256 IPR014001 -
Cmo05g00440 413 CDD DEADc_EIF4A 45 242 - -
Cmo05g00440 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Cmo05g00440 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 413 - -
Cmo05g00440 413 PANTHER RNA HELICASE 23 413 - -
Cmo05g00440 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Cmo05g00440 413 CDD SF2_C_DEAD 253 383 - -
Cmo05g00440 413 SMART helicmild6 293 374 IPR001650 -
Cmo05g00440 413 Gene3D - 249 413 IPR027417 -
Cmo05g00440 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Cmo05g00440 413 Gene3D - 30 248 IPR027417 -
Cmo05g00440 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Cmo05g00440 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00057 Cmo-Chr1:200325 Cmo05g00440 Cmo-Chr5:2056656 0 dispersed
Cmo05g00440 Cmo-Chr5:2056656 Cmo17g00686 Cmo-Chr17:7014859 0 dispersed
Cmo05g00440 Cmo-Chr5:2056656 Cmo14g01286 Cmo-Chr14:10771250 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00440 K03257 - jre:109008881 793.112