Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00443 ATGGCAGAAGAGGAACCCGGAGAGGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCTGTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTCGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAATCGCCGTCAAAAGGCATCAATCGATCGGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCAGATGCTCCGGCGAAGGACGAGAATCGCACTCGCGTTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGAGAAGACAGCGTCCGCGGAGACCAACGAGACATAG 423 52.01 MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2064082 2064504 + CmoCh05G004430.1 Cmo05g00443 382578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00443 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 76 IPR003958 -
Cmo05g00443 140 PANTHER NUCLEAR FACTOR Y, SUBUNIT C13 3 129 - -
Cmo05g00443 140 SUPERFAMILY Histone-fold 11 90 IPR009072 GO:0046982
Cmo05g00443 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Cmo05g00443 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00443 Cmo-Chr5:2064082 Cmo12g00059 Cmo-Chr12:309867 2.55E-40 dispersed
Cmo05g00443 Cmo-Chr5:2064082 Cmo04g01369 Cmo-Chr4:6971421 1.25E-11 transposed
Cmo05g00443 Cmo-Chr5:2064082 Cmo18g00833 Cmo-Chr18:9713410 1.65E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9814 PF00808 CBFD_NFYB_HMF 3.90E-21 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00443 - - cmo:103488501 228.794