Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00453 ATGTTAACCTCTAGGGCTTTGATTTTTTCACATTCGGTGGTAAAAAAGGCAATCGATTTGATACCGGACGCAATTTTAATGGACGACGGAGGAGCTTCTCAGCCGGACGACGCCGTCATGTCGGAGGCGGCGTCTATACCGTCGCAGCATGACCCGGCGGCGCACCAGCCGCCGTCGATGGGGATGGAAAATATTCCGGCGACTTTGAGCCATGGAGGGAGATTTATTCAGTACAATATCTTTGGTAACATCTTCGAAGTTACGGCTAAGTACAAGCCTCCCATTATGCCTATTGGCAAAGGCGCTTATGGCATCGTCTGTTCTGCTCTAAATTCCGAGACGAACGAGCACGTGGCGATCAAGAAGATTGCTAATGCGTTTGACAACAAGATCGATGCTAAGAGAACTCTTCGTGAGATCAAGCTTCTTCGGCACATGGATCATGAAAACGTTGTTGCAATTAGGGATATCATACCTCCGCCTCTAAGGGAAACATTTAACGATGTTTATATAGCATATGAGCTGATGGATACCGACCTTCATCAAATAATTCGTTCAAACCAAGCACTATCAGAGGAGCATTGTCAGTATTTCCTGTACCAGATTCTTCGAGGATTGAAGTACATACATTCAGCAAATGTTCTGCACAGAGATTTGAAGCCTTCCAATCTGTTATTAAATGCCAACTGTGACCTGAAAATATGCGATTTTGGACTTGCTCGTGTTACTTCTGAAACCGACTTTATGACAGAATATGTGGTTACAAGATGGTACCGCGCGCCAGAGCTCTTACTTAATTCATCTGACTACACAGCAGCTATCGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCCTTGTTTCCCGGTCGAGATCATGTGCATCAGTTACGCTTGCTTTTGGAGCTGATTGGCACTCCATCAGAGGCTGAACTCGGTTTCTTGAACGAGAATGCTAAAAGATACATACGCCAACTTCCTTATTACCATCGGCAGTCATTTACTGGAAAGTTTCCACATGTCCATCCTGCAGCCATTGATCTGGCGGAGAAGATGTTAACATTTGATCCAGGACAGAGAATTACCGTTGAAGATGCTCTAGCTCATCCTTATTTGACATCATTGCATGACATTAGTGATGAGCCTGTCTGCCTGACTCCCTTCAGCTTTGATTTCGAGCAGCATGCACTTACGGAGGAACAGATGAAAGAGCTGATCTATCGAGAGGCGCTTGCATTCAACCCCGAGTATTATCAGCAATAA 1278 45.07 MLTSRALIFSHSVVKKAIDLIPDAILMDDGGASQPDDAVMSEAASIPSQHDPAAHQPPSMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEAELGFLNENAKRYIRQLPYYHRQSFTGKFPHVHPAAIDLAEKMLTFDPGQRITVEDALAHPYLTSLHDISDEPVCLTPFSFDFEQHALTEEQMKELIYREALAFNPEYYQQ 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2102114 2108899 + CmoCh05G004530.1 Cmo05g00453 382588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00453 425 ProSitePatterns Protein kinases ATP-binding region signature. 98 122 IPR017441 GO:0005524
Cmo05g00453 425 SMART serkin_6 92 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00453 425 ProSiteProfiles Protein kinase domain profile. 92 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00453 425 Gene3D Phosphorylase Kinase; domain 1 75 414 - -
Cmo05g00453 425 SUPERFAMILY Protein kinase-like (PK-like) 97 385 IPR011009 -
Cmo05g00453 425 Gene3D Transferase(Phosphotransferase) domain 1 176 404 - -
Cmo05g00453 425 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 57 423 - -
Cmo05g00453 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Cmo05g00453 425 ProSitePatterns MAP kinase signature. 127 230 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo05g00453 425 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 57 423 - -
Cmo05g00453 425 CDD STKc_TEY_MAPK 85 420 - -
Cmo05g00453 425 Pfam Protein kinase domain 97 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00584 Cmo-Chr1:2961319 Cmo05g00453 Cmo-Chr5:2102114 0 dispersed
Cmo05g00453 Cmo-Chr5:2102114 Cmo15g01314 Cmo-Chr15:9024086 0 dispersed
Cmo12g00069 Cmo-Chr12:367060 Cmo05g00453 Cmo-Chr5:2102114 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74346 PF00069 Pkinase 1.00E-72 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00453 K14512 - csv:101204301 787.334