Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00464 ATGGATCTTTCTCACAATCCTGATTCTCCGCCGAGTTTCTCCACCGCCGATTCCTCTACTGTTTGGACCAACGCACTCCCCTCCGCCGATTCTTTTTACTTCTTTCCCGCCGATAGAGATTCCGCCGTCCTCACAGAATTCGGCTGGAATTTCCTCTCCCACGATGCTCAACCTACTCGATTCCTCGACGACAAGCCTGATTTGCCTGGAACCTCCGCGCTGGCCGTCGATGAAACCGGCGGATTACAGAGTCCTGATGCTCCTGTTCCAGTCGCGTCGAATCCTTCAATGTCTTCCAGCTCTAGCGGAGAACCGCCGGAGAAACTGCCTGAGATTCCGCAGAAGGTCAAAAAGAAGGGGCAAAAGCGAATACGGCAGCCACGATTTGCATTCATGACTAAAAGCGAAGTTGATCATCTTGAAGACGGCTACCGCTGGAGGAAATATGGCCAAAAGGCTGTCAAGTACAGTCCATTTCCTAGGAGTTACTATAGGTGCACGAACAGCAAATGCACAGTGAAGAAAAGGGTAGAACGGTCATCTGAAGATCCAAGCGTTGTGATAACAACATATGAAGGGCAACACTGTCATCACACCATTGGATTCCCTCGAGGTGGATTTAACATGGCGCACAAAGCTGCTTTTGGGTCTCAATTTTCATCTCAAGGCGCACAGATTTATTACCCTGAAACTCAGCCGCCGCCCAGAAACAATAATAATAATGACACTCCCACTGCCCGTGACCACCACTCACAGCACTTGTCCACTGCAGCAGCATCATCATCATCCAATGCGTTGTCGTTGGAGCAACAAGAACCAACAAACTCACAGCCTCAAGTTGCTTCCGACGAGGGCTTGCTAGGCGATATTGTGCCGCCCGGCATGATGCGTAGAACATGA 900 50.33 MDLSHNPDSPPSFSTADSSTVWTNALPSADSFYFFPADRDSAVLTEFGWNFLSHDAQPTRFLDDKPDLPGTSALAVDETGGLQSPDAPVPVASNPSMSSSSSGEPPEKLPEIPQKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKYSPFPRSYYRCTNSKCTVKKRVERSSEDPSVVITTYEGQHCHHTIGFPRGGFNMAHKAAFGSQFSSQGAQIYYPETQPPPRNNNNNDTPTARDHHSQHLSTAAASSSSNALSLEQQEPTNSQPQVASDEGLLGDIVPPGMMRRT 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2164305 2166835 - CmoCh05G004640.1 Cmo05g00464 382599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00464 299 SUPERFAMILY WRKY DNA-binding domain 132 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo05g00464 299 SMART WRKY_cls 140 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo05g00464 299 MobiDBLite consensus disorder prediction 58 123 - -
Cmo05g00464 299 Gene3D WRKY domain 127 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo05g00464 299 ProSiteProfiles WRKY domain profile. 135 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo05g00464 299 MobiDBLite consensus disorder prediction 227 299 - -
Cmo05g00464 299 MobiDBLite consensus disorder prediction 227 282 - -
Cmo05g00464 299 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 205 IPR044810 GO:0003700
Cmo05g00464 299 Pfam WRKY DNA -binding domain 141 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo05g00464 299 PANTHER WRKY TRANSCRIPTION FACTOR 57-RELATED 18 205 - -
Cmo05g00464 299 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00464 Cmo-Chr5:2164305 Cmo17g00367 Cmo-Chr17:2255107 8.21E-51 dispersed
Cmo12g00074 Cmo-Chr12:398380 Cmo05g00464 Cmo-Chr5:2164305 2.72E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9815 PF03106 WRKY 1.90E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00464 - - cmo:103488478 323.939