Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00477 ATGCCGAGCATTTCGGCCCTCTATTCCATAGAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTGTATGATTTGACGTCATATTTGGATGAGCATCCTGGTGGAGATGATGTTATTGTGGCTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGCTGGTCATAGCAAAGATGCTCGAGAGCTGATGGAGAAGTTCTATATCGGCGAGCTTGATCCTTCTTCCTCAGCGATCCCAGAACTCGAAGCAAAAGAACCAGATGGTTATGCAGCTCGGGTTCAGACCTTGACAAAGCAATACTGGGGGATTCCTATTGCAGTACTTGGTATTTCTGTAGTACTTGGCTGGTTATACTTGCTCAAAAAGTGA 396 45.71 MPSISALYSIEEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDVIVAATGRDATDDFEDAGHSKDARELMEKFYIGELDPSSSAIPELEAKEPDGYAARVQTLTKQYWGIPIAVLGISVVLGWLYLLKK 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2225434 2227615 + CmoCh05G004770.1 Cmo05g00477 382612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00477 131 Pfam Cytochrome b5-like Heme/Steroid binding domain 10 80 IPR001199 -
Cmo05g00477 131 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 85 IPR036400 -
Cmo05g00477 131 PANTHER CYTOCHROME B5 3 129 - -
Cmo05g00477 131 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cmo05g00477 131 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cmo05g00477 131 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cmo05g00477 131 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cmo05g00477 131 PANTHER CYTOCHROME B5 ISOFORM A 3 129 - -
Cmo05g00477 131 Gene3D - 5 89 IPR036400 -
Cmo05g00477 131 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Cmo05g00477 131 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cmo05g00477 131 SMART Cyt_b5_2 8 81 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00477 K23490 CYB5; cytochrome b5 - csv:101220127 228.794
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00477 Cmo-Chr5:2225434 Cmo14g01941 Cmo-Chr14:14367871 8.56E-39 dispersed
Cmo19g00182 Cmo-Chr19:1180756 Cmo05g00477 Cmo-Chr5:2225434 2.78E-19 dispersed
Cmo05g00477 Cmo-Chr5:2225434 Cmo06g01256 Cmo-Chr6:9487661 6.79E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G53560 76.9 8.4e-58 220.3
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.2e-56 216.5
Cmo14g01941 . 1 133 NADPH P450 reductases AT5G53560 69.9 4.8e-53 204.5
Cmo06g01256 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G53560 63.9 3.9e-47 184.9
Cmo02g01726 . 80 205 NADPH P450 reductases AT5G53560 65.1 2.4e-44 175.6
Cmo14g01941 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo06g01256 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G48810 62.2 3.5e-46 181.8
Cmo02g01726 . 80 206 NADPH P450 reductases AT5G48810 61.2 4.2e-44 174.9
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G48810 57.4 2.1e-43 172.6
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G48810 57.4 6.1e-43 171.0
Cmo14g01941 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.0e-50 196.8
Cmo06g01256 . 22 133 NADPH P450 reductases AT2G32720 83.0 5.0e-50 194.5
Cmo17g00112 . 64 175 NADPH P450 reductases AT2G32720 77.7 4.3e-46 181.4
Cmo02g01726 . 95 206 NADPH P450 reductases AT2G32720 69.6 3.2e-41 165.2
Cmo02g01170 CST 22 133 NADPH P450 reductases AT2G32720 66.1 1.0e-39 160.2
Cmo19g00182 . 5 108 NADPH P450 reductases AT2G32720 74.0 1.0e-39 160.2
Cmo15g01073 CST 22 133 NADPH P450 reductases AT2G32720 64.3 5.1e-39 157.9
Cmo05g00477 . 1 130 NADPH P450 reductases AT1G26340 57.5 6.1e-40 161.0
Cmo07g01169 CST 2 281 NADPH P450 reductases AT5G17770 81.1 6.3e-132 467.6
Cmo03g00203 CST 2 281 NADPH P450 reductases AT5G17770 80.7 5.4e-131 464.5
Cmo06g00047 . 2 316 NADPH P450 reductases AT5G17770 69.0 1.6e-119 426.4
Cmo20g00011 . 1 267 NADPH P450 reductases AT5G17770 64.9 3.5e-98 355.5
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G53560 76.9 8.4e-58 220.3
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.2e-56 216.5
Cmo14g01941 . 1 133 NADPH P450 reductases AT5G53560 69.9 4.8e-53 204.5
Cmo06g01256 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G53560 63.9 3.9e-47 184.9
Cmo02g01726 . 80 205 NADPH P450 reductases AT5G53560 65.1 2.4e-44 175.6
Cmo14g01941 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo06g01256 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G48810 62.2 3.5e-46 181.8
Cmo02g01726 . 80 206 NADPH P450 reductases AT5G48810 61.2 4.2e-44 174.9
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G48810 57.4 2.1e-43 172.6
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G48810 57.4 6.1e-43 171.0
Cmo14g01941 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.0e-50 196.8
Cmo06g01256 . 22 133 NADPH P450 reductases AT2G32720 83.0 5.0e-50 194.5
Cmo17g00112 . 64 175 NADPH P450 reductases AT2G32720 77.7 4.3e-46 181.4
Cmo02g01726 . 95 206 NADPH P450 reductases AT2G32720 69.6 3.2e-41 165.2
Cmo02g01170 CST 22 133 NADPH P450 reductases AT2G32720 66.1 1.0e-39 160.2
Cmo19g00182 . 5 108 NADPH P450 reductases AT2G32720 74.0 1.0e-39 160.2
Cmo15g01073 CST 22 133 NADPH P450 reductases AT2G32720 64.3 5.1e-39 157.9
Cmo05g00477 . 1 130 NADPH P450 reductases AT1G26340 57.5 6.1e-40 161.0
Cmo07g01169 CST 2 281 NADPH P450 reductases AT5G17770 81.1 6.3e-132 467.6
Cmo03g00203 CST 2 281 NADPH P450 reductases AT5G17770 80.7 5.4e-131 464.5
Cmo06g00047 . 2 316 NADPH P450 reductases AT5G17770 69.0 1.6e-119 426.4
Cmo20g00011 . 1 267 NADPH P450 reductases AT5G17770 64.9 3.5e-98 355.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013997 0 1 0 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 0 1 1 0 1 0 1 0 1 1 2 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00477 Cmo_Chr05 FPKM 4.654341 4.177383 5.791197 7.787559 5.711489 3.189174 5.663634 7.514336 5.816107 9.762455