Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00485 ATGAGAACGGGGAAAAGCAATCAGGAAGATGAAGAGTATGAGGACGACGAGATGGTTGCTAAACGAGAGGGGCCTTCTTCTACTTCCAACGCTAATAGTAGCATCGGAAATAGCAAAGATGCGAAGAACAACGATAGGGCTAATGCCATACGGTCGAAGCACTCTGTCACCGAGCAGCGTAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCACAGCGATCAGAAGAGAGATACCGCGTCATTTTTATTGGAGGTGATCGAGTATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCTTATCAGAATTGGAGTGGGGAGCCTACTAAGCTAATACCATGGAGAAATACTCATTGGCGTATGCAGACTTTTGTTGGTCATCCACAGTCTGTAAAAAATGGTTCTGCTTCAGGACCAACGTATTCAGGGAAGTTTGATGACAACAACATTTCAATTTCCCCAGCCATGCTTGCAAGCTCACAAAATCCCCTCGACTCCCATTCAGGCAGAGATGTTCTGCAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATATACATGCTTCTATCCGTAGTGACGGTGTTCTAGATCAATCTCTCCAGATTCCAATTTCCGGTGGACAGGCAACGGAGTGTCCCATCGCCAACAATGCATCAAGCCAACCAGAAGAGATGGCTATTGAAGGGGGTACAATAAGCATTTCAAGTCTTTATTCAGAAGGGTTATTGAACAGCTTGACTCAAGCTCTGCAGAATACTGGACTGGATTTGTCACAGGCTAGTGTCTCCATTCAGGTTGATCTTGGAAAGAGAGCAAATAAAGGTCCCCCATTTGGAATGCCCATTTTTAAGGAAACTGGCAACCCTTCCTCCTCCGGCCACCCTGCAATGGCACACGTAGGGGACCTGGGTAGTGGAGATGACTCAGAACAAGTGAAAAAGCGGCTAAGAACATGA 1002 45.41 MRTGKSNQEDEEYEDDEMVAKREGPSSTSNANSSIGNSKDAKNNDRANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNTHWRMQTFVGHPQSVKNGSASGPTYSGKFDDNNISISPAMLASSQNPLDSHSGRDVLQDADITNKVPLPMSLEGNIHASIRSDGVLDQSLQIPISGGQATECPIANNASSQPEEMAIEGGTISISSLYSEGLLNSLTQALQNTGLDLSQASVSIQVDLGKRANKGPPFGMPIFKETGNPSSSGHPAMAHVGDLGSGDDSEQVKKRLRT 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2277565 2284020 - CmoCh05G004850.1 Cmo05g00485 382620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00485 333 Gene3D - 47 119 IPR036638 GO:0046983
Cmo05g00485 333 CDD bHLH_AtBIM_like 48 124 - -
Cmo05g00485 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983
Cmo05g00485 333 MobiDBLite consensus disorder prediction 1 62 - -
Cmo05g00485 333 MobiDBLite consensus disorder prediction 289 333 - -
Cmo05g00485 333 SMART finulus 55 105 IPR011598 GO:0046983
Cmo05g00485 333 MobiDBLite consensus disorder prediction 23 43 - -
Cmo05g00485 333 PANTHER TRANSCRIPTION FACTOR BIM2 1 333 - -
Cmo05g00485 333 MobiDBLite consensus disorder prediction 44 62 - -
Cmo05g00485 333 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 333 IPR044295 GO:0003700|GO:0006351|GO:0046983
Cmo05g00485 333 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Cmo05g00485 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00485 Cmo-Chr5:2277565 Cmo10g00294 Cmo-Chr10:1304106 3.45E-73 dispersed
Cmo12g00096 Cmo-Chr12:515626 Cmo05g00485 Cmo-Chr5:2277565 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9816 PF00010 HLH 1.80E-13 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00485 - - csv:101217750 599.742