Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00488 ATGGTTGGGAGGAGGAACTCTGGAAAGGCTTCCCCACTATTTCTAGTTCTCTTGGCTCTTTCTTTCTGCTTTGTAACTTATAATTTGGTGACAGCTATTATTCAGTATGGATCAATTGGAAGGGAAGTTGGTGATAACTCGTATGATCGATTATCGAATGACCCTATCATTGAAATGCCAGAGAATGTGAGAAAAAGGAAGACAAAGGCACCTTTCCATGTTGCTTTGACAGCGACCGACGCTCCTTATAGCAAATGGCAATGTCGTATTATGTATTACTGGTACAAGAAGAAGAAGAATTTGCCTGTATCTGAGATGGGAGGGTTCACTCGTATTTTACATTCTGGACAACCTGATAACCTAATGGATGAGATTCCTACTATGGTGGTGGATCCACTTCCTGCTGGTGTGGACCGGGGTTACGTCGTCTTGAACAGACCGTGGGCCTTCGTGCAGTGGCTGGAAAAGGCAACAATAGAGGAAGAATATATATTAATGGCAGAACCAGATCATATATTTGTTAATCCGCTTCCTAATTTATCTGATGGAGGTTATCCAGCTGCCTTTCCATTTTTCTACATCAAACCTACTCAAAATGAAAAGGTTTTGAGAAAGTTTTTCCCCGAGGAATATGGTCCCGTAACCAAAGTCGATCCAATCGGCAACTCCCCTGTGATTATCAGGAAGGATTTGCTGGAAAAGATTGCTCCTACCTGGATGAATATTTCATTGAAGATGAAAGACGATCCCGAGGCAGATAAAGCTTTTGGATGGGTGCTAGAAATGTATGCATATGCGATTGCTTCGGCTTTGCACGGCGTGCAGCATGTTCTTCGGAAAGATTTTATGCTGCAGCCACCATGGGACATGGACATTGGTAAAAAGTTCATTATACATTATACTTATGGATGTGACTACAACTTAAAGCATTATGTTGTTTATATGGGAGGTGGAAGCAGCAGCAATGAAGAACATGAAGAAACAGCTGGTGAATTGGATTTTCTGCAACTTTTATCCTCTGTAAATCCAAGGAGGAGAGAGAAAGAGAGAGGATCAAGGGATTTGATCCACCAATATCACCATGCTTTCAAAGGCTTTTCAGCAATGCTCACTGAGGAAGAAGCTTCTTCTCTATCCGGTGTTGATGGAATCGTGTCGGTGTTCCCCGATCCGACGCTCCAGCTCCACACTACACGTTCTTGGGATTTCTTGGACTCCATCTCCGGCCTCCGCCCTCCGACGCCGCTGCCGCCGCCGCATTCTTACGCCAGTTCATCGGATGTCGTCGTCGGCATCATTGACACCGGGATTTGGCCGGAGTCTCAATCTTTCAACGATGAAGGGATTGGTGAAATTCCATCTAAATGGAAAGGAGTTTGTATGGAGGCACCTGATTTCAAGAAGTCTAATTGCAACAGGAAGTTGATAGGTGCAAGATACTATAATGTTGTCGAGCCCAATGGGAACGATAGCCGTGGGAGCGTGCCGAAGGGCACACCGAGGGATTCGCTTGGCCATGGGACTCACACTTCGTCAATAGCAGCTGGAGCCAGAGTCCCGAATGCAAGTTACTTCGGCTTAGCAAGAGGTACAGCGAGGGGCGGTGGCATTCCGTCCACAAGGATTGCTAGCTATAAGGTTTGTGCTGGTGTTGGCTGCTCTGGGGCTGCAATCCTCAAAGCCATTGATGATGCAGTCAAGGATGGAGTTGATATCATTTCGATCTCGATTGGGATTGGTTCCCCGTTGTTTCAGTCGGATTATTTGAATGACCCGATTGCCATTGGAGCATTCCATGCCCAACAAATGGGAGTTTTGGTTGTCTGCTCTGCTGGGAATGATGGCCCTGATCCTAACACTGTGGGGAATGTTGCTCCTTGGATTTTCACTGTTGCTGCTTCTAACATTGACAGGGATTTCCAGTCCACTGTGGTTCTTGGCAATGGCAAGACTTTTCAGGGGACTGCTATAAATCTCTCAAATCTTACTAGCTCAAAGACTTATCCTCTTGTATTTGGAAAGGACGCTGCTGCTAAATTCACACCCATATCAGAAGCCAGGAATTGTTATCCGGGATCATTGGATCGATCCAAAGTTGCAGGCAAGATCGTTGTTTGCGCCTCGGATGATTTTAGTACTTCAAGAACAATAAAGGAACTGGTTGTACAAGATGCTAAAGCCGTAGGGTTAATACTGATCAATGAGGCATCAAAAACTGTGCCAATGGATTCAAACATTTTCCCATTTACACAAATTGGGAATTCAGAGGGTCTTCAAATTCTTGAATACATTAACTCCACCAAGAACCCAACAGCCACAATTCTCAGAACAGTGGAGGTTCGACGACTCAAACCTGCTCCGGTTGTGGCTTATTTCTCGTCGAGAGGGCCATCACCGCTTACTGAAAACATTCTTAAGCCAGATATCATGGCTCCAGGAGTATCCATTTTAGCAGCTATAGCTCCGAAGAGCGATGCAGAAAGCGGTCCAATTGGTAAGAAGCCTTCCAATTACGCAATGAGATCCGGGACTTCGATGTCATGCCCACATGTAGCAGGTGCTGCTGCATTCGTCAAATCGGTTTATCACAATTGGAGTTCTTCGATGATCAAATCCGCTCTCATGACAACAGCAACTCTGTATGATAATCAAAGGAAATTCATGAGAAATAGCACAAACAACCCTTCAAATCCACATGAGATGGGAGCTGGAGAAATCAGCCCCATAAAAGCTCTTAATCCTGGATTGGTTTACGAATCTACGAACGAAGATTATCTCCGTTTCCTCTGTTATTACGGGTATTCGAACAAGATCATAAGATCTGTGTCGAAACAAAACTTCAGCTGCCCGAAAACTTCGAAAGAATATCTTATCTCGAGTGTTAATTATCCATCCATCTCCATTAGCAAACTAGACAGAAAGGTAGCTGGTGGTAAAGTAGTAGTAGAAAGAACAGTGACTAATGTAGGAGCTCCAGACGCCACTTACATTGCCAAAGTTCATTCTTCAGAGGGTTTAATAGTGAAAGTTACCCCAAGTAAGATTGTTTTCACTGAGAAGGTAAAGAAAGTTACTTTCAAAGTCTCGTTTTACGGCAAGGAGGTTCGTAGCGGTTACAACTTCGGGACGATAACGTGGCGGGACACTGCTCATTCGGTTAGAACGGTTTTTGCTGTAAATGTAGTGTAA 3189 44.5 MVGRRNSGKASPLFLVLLALSFCFVTYNLVTAIIQYGSIGREVGDNSYDRLSNDPIIEMPENVRKRKTKAPFHVALTATDAPYSKWQCRIMYYWYKKKKNLPVSEMGGFTRILHSGQPDNLMDEIPTMVVDPLPAGVDRGYVVLNRPWAFVQWLEKATIEEEYILMAEPDHIFVNPLPNLSDGGYPAAFPFFYIKPTQNEKVLRKFFPEEYGPVTKVDPIGNSPVIIRKDLLEKIAPTWMNISLKMKDDPEADKAFGWVLEMYAYAIASALHGVQHVLRKDFMLQPPWDMDIGKKFIIHYTYGCDYNLKHYVVYMGGGSSSNEEHEETAGELDFLQLLSSVNPRRREKERGSRDLIHQYHHAFKGFSAMLTEEEASSLSGVDGIVSVFPDPTLQLHTTRSWDFLDSISGLRPPTPLPPPHSYASSSDVVVGIIDTGIWPESQSFNDEGIGEIPSKWKGVCMEAPDFKKSNCNRKLIGARYYNVVEPNGNDSRGSVPKGTPRDSLGHGTHTSSIAAGARVPNASYFGLARGTARGGGIPSTRIASYKVCAGVGCSGAAILKAIDDAVKDGVDIISISIGIGSPLFQSDYLNDPIAIGAFHAQQMGVLVVCSAGNDGPDPNTVGNVAPWIFTVAASNIDRDFQSTVVLGNGKTFQGTAINLSNLTSSKTYPLVFGKDAAAKFTPISEARNCYPGSLDRSKVAGKIVVCASDDFSTSRTIKELVVQDAKAVGLILINEASKTVPMDSNIFPFTQIGNSEGLQILEYINSTKNPTATILRTVEVRRLKPAPVVAYFSSRGPSPLTENILKPDIMAPGVSILAAIAPKSDAESGPIGKKPSNYAMRSGTSMSCPHVAGAAAFVKSVYHNWSSSMIKSALMTTATLYDNQRKFMRNSTNNPSNPHEMGAGEISPIKALNPGLVYESTNEDYLRFLCYYGYSNKIIRSVSKQNFSCPKTSKEYLISSVNYPSISISKLDRKVAGGKVVVERTVTNVGAPDATYIAKVHSSEGLIVKVTPSKIVFTEKVKKVTFKVSFYGKEVRSGYNFGTITWRDTAHSVRTVFAVNVV 1062
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2294562 2307726 + CmoCh05G004880.1 Cmo05g00488 382623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00488 1062 SUPERFAMILY Subtilisin-like 421 916 IPR036852 GO:0004252|GO:0006508
Cmo05g00488 1062 CDD PA_subtilisin_like 643 774 - -
Cmo05g00488 1062 Pfam PA domain 667 759 IPR003137 -
Cmo05g00488 1062 ProSitePatterns Serine proteases, subtilase family, serine active site. 843 853 IPR023828 -
Cmo05g00488 1062 Gene3D - 637 781 - -
Cmo05g00488 1062 CDD Peptidases_S8_3 393 879 IPR034197 -
Cmo05g00488 1062 Gene3D - 929 1062 - -
Cmo05g00488 1062 Pfam Subtilase family 425 890 IPR000209 GO:0006508|GO:0008236
Cmo05g00488 1062 Gene3D Peptidase S8/S53 domain 427 925 IPR036852 GO:0004252|GO:0006508
Cmo05g00488 1062 PANTHER CUCUMISIN-LIKE 349 1059 - -
Cmo05g00488 1062 MobiDBLite consensus disorder prediction 487 512 - -
Cmo05g00488 1062 Pfam Fibronectin type-III domain 961 1059 IPR041469 -
Cmo05g00488 1062 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 349 1059 IPR045051 -
Cmo05g00488 1062 PRINTS Subtilisin serine protease family (S8) signature 502 515 IPR015500 -
Cmo05g00488 1062 PRINTS Subtilisin serine protease family (S8) signature 842 858 IPR015500 -
Cmo05g00488 1062 PRINTS Subtilisin serine protease family (S8) signature 425 444 IPR015500 -
Cmo05g00488 1062 ProSiteProfiles Serine proteases, subtilase domain profile. 400 912 - -
Cmo05g00488 1062 Pfam Peptidase inhibitor I9 311 396 IPR010259 -
Cmo05g00488 1062 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 303 396 IPR037045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00488 K25898 CRSP; CO(2)-response secreted protease - csv:101220772 1308.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00488 Cmo-Chr5:2294562 Cmo16g01017 Cmo-Chr16:7020890 3.25E-174 dispersed
Cmo14g00701 Cmo-Chr14:3608684 Cmo05g00488 Cmo-Chr5:2294562 1.16E-08 dispersed
Cmo20g00121 Cmo-Chr20:610755 Cmo05g00488 Cmo-Chr5:2294562 8.82E-151 dispersed
Cmo09g00090 Cmo-Chr9:416229 Cmo05g00488 Cmo-Chr5:2294562 0 transposed
Cmo12g00098 Cmo-Chr12:532747 Cmo05g00488 Cmo-Chr5:2294562 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g32 . . . . . . . . Cmo05g00488 . . Cma05g00431 . . Sed03g1452 . . Bhi04g00878 Tan02g2535 Cmetu03g1217 . Hepe10g0386 . Lcy13g1440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe11g00405 . . . . . . . . Cla08g01202 . Cec08g1240 . Clacu08g1360 . . . Csa02g02246 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012730 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00488 Cmo_Chr05 FPKM 48.861763 51.909481 32.698376 31.627392 19.541983 21.851116 20.857435 54.042351 50.357452 53.911736