Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00490 ATGTCCTCCGCCGATTCCCCTTCGTCGTCGTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCGCCCACGCCGGCGTCGGCCTCGGCTACGGCATCGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATAATGCTCGTCTCCTACGCTTGCATTCGCGCCAAATCCACTCGCCCTAGACCTAGACCTAGACCTAGACCTTCCGCTCCTCTCCCCCCTCCCGCCGCCGACAATGTGGTGGTTCTCATGGTTGGATTAGACGGCTCCATCATCGAATCGTACCCTAAGTTGGTCCTCGGAGAGAGCCGCCGTCTCCCGGCCCCAAACCACGGCCCTTGCTCCATTTGCCTCTCCGATTACCAGCCCTACGATTCCGTCCGCTGCATTCCGGATTGCCGGCACTGTTTCCACTCCGCTTGCGTCGATGAATGGCTCCGGATGAGCGCCACTTGCCCCCTGTGTCGAAACTCCCCTGCTCCTACCCCTGTTGCTACTCCTCTCTCCGAATTCGCGCCTCTGGCTTCCAACGCCAGGTGA 546 62.45 MSSADSPSSSSSSSSSAAAAASPAHAGVGLGYGIAIAVSILVFISTIMLVSYACIRAKSTRPRPRPRPRPSAPLPPPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYQPYDSVRCIPDCRHCFHSACVDEWLRMSATCPLCRNSPAPTPVATPLSEFAPLASNAR 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2312974 2313519 + CmoCh05G004900.1 Cmo05g00490 382625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00490 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 163 IPR013083 -
Cmo05g00490 181 Pfam Ring finger domain 116 158 IPR001841 -
Cmo05g00490 181 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Cmo05g00490 181 SUPERFAMILY RING/U-box 115 162 - -
Cmo05g00490 181 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 30 163 - -
Cmo05g00490 181 SMART ring_2 116 157 IPR001841 -
Cmo05g00490 181 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 30 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01106 Cmo-Chr3:8935077 Cmo05g00490 Cmo-Chr5:2312974 7.45E-38 dispersed
Cmo05g00490 Cmo-Chr5:2312974 Cmo14g00369 Cmo-Chr14:1709505 1.58E-35 dispersed
Cmo05g00490 Cmo-Chr5:2312974 Cmo04g00734 Cmo-Chr4:3649167 2.06E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00490 - - cmos:111462423 310.457