Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00510 ATGGAGCAATTTCAGAACGACGATCTTGCGTATATTGTGGATGATTATTTTGAAGTCGGTGATTTTGACGACGGTCAGTTTTTCTCTGATGATGACTTCCATACTGATCAGAGTACCGAGCACATAGACTCCGACTTTGAGGACGACATCGATACAAGCACGCCGAGGACGGATACCTCTGCTTTGGATGCTAGGAATGGGAAAGATATCCAGGGAATACCTTGGGAGAGGTTCACCTTTACTAGGGAGAATTATCGGGAAAATCGATTGAGCCAGTACAAGAACTTTGAGAGCCTGCTAATCTCTCGAGATGAACTGGAAAAGGAATGCTTGCGAGTGGAGAAGGGGAATAAGTTTTATGACTTCCAGTTCAATACAAGGCTTGTTAAATCAACAATTGTTCATTTTCAGCTAAGGAATCTCTTGTGGGCAACTTCTAAGCATGACGTATACCTTATGCAAAACTACTCAGTAATGCACTGGTCCTCATCGCTTCGGAGAGGCAAAGAAGTACTCAATGTAGCTAAACAAATCGTTCCCACCGTGAAACGCCCTGGAGTCTCGTCCCAGTCATTGTCCAGAGTGCAGATAAGTACAATGACAGTAAAGGAGAACTTAATCGTGGCGGGTGGTTTTCAAGGGGAACTAATTTGCAAGTACGTGAATAATCCTGGAGTTGCATTTTGCACCAAAATGACAACAGAAGAAAATGCAATTACAAATGCTGTTGATATCTTTCAAAATCCAGATGGTGCAACAAGGGTTGTCGCTGCAAATAATGATGCAAAAATTAGGATTTACGATGCTAAGACATTTACTTGCCTCAACGGCTTCACGTTTGGCTGGTCTGTAAATGTGACAGAGAGCCTGAAAGGGCACTTGGATTACTCTTTTGCTTCTGCATGGCACCCTGATGGACACATTTTGGCGACTGGGAACCAAGATACCACCTGCAGGCTGTGGGACATAAGGAAAACGTCGAAGTCTCTAGCTGTGCTCAAGGGAAGAATGGGATCAATCAGATGTGTAAAATTCAGCTCCGATGGCAAATTCCTGTCGACTGCAGAGCCTGCAGATTTCGTCCATATCTATGAAAGTCGCACAGGTTATGAACAAGCACAAGAAATTGATCTGTTTGGGGAAATTGCTGGAATATCCTTCAGTCCCGACACGGAAGCTCTGTTTGTTGGCGTCGCTGATCGAATATACGGTAGTGTATTAGAGTTCAACAAACGACATCATAATAAGTACATAGATTCCATGTTCTAG 1269 43.5 MEQFQNDDLAYIVDDYFEVGDFDDGQFFSDDDFHTDQSTEHIDSDFEDDIDTSTPRTDTSALDARNGKDIQGIPWERFTFTRENYRENRLSQYKNFESLLISRDELEKECLRVEKGNKFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSSLRRGKEVLNVAKQIVPTVKRPGVSSQSLSRVQISTMTVKENLIVAGGFQGELICKYVNNPGVAFCTKMTTEENAITNAVDIFQNPDGATRVVAANNDAKIRIYDAKTFTCLNGFTFGWSVNVTESLKGHLDYSFASAWHPDGHILATGNQDTTCRLWDIRKTSKSLAVLKGRMGSIRCVKFSSDGKFLSTAEPADFVHIYESRTGYEQAQEIDLFGEIAGISFSPDTEALFVGVADRIYGSVLEFNKRHHNKYIDSMF 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2463460 2469083 + CmoCh05G005100.1 Cmo05g00510 382645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00510 422 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 195 400 IPR011047 -
Cmo05g00510 422 Gene3D - 108 404 IPR015943 GO:0005515
Cmo05g00510 422 Pfam WD domain, G-beta repeat 289 322 IPR001680 GO:0005515
Cmo05g00510 422 ProSitePatterns Trp-Asp (WD) repeats signature. 309 323 IPR019775 -
Cmo05g00510 422 PANTHER OS03G0386000 PROTEIN 1 287 - -
Cmo05g00510 422 PANTHER OS03G0386000 PROTEIN 286 422 - -
Cmo05g00510 422 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 287 - -
Cmo05g00510 422 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 286 422 - -
Cmo05g00510 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 324 - -
Cmo05g00510 422 SMART WD40_4 232 268 IPR001680 GO:0005515
Cmo05g00510 422 SMART WD40_4 283 322 IPR001680 GO:0005515
Cmo05g00510 422 SMART WD40_4 326 365 IPR001680 GO:0005515
Cmo05g00510 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 331 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00510 - - - csv:101222353 759.214
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00510 Cmo09g00636 CCT
Cmo05g00510 Cmo12g00116 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00510 Cmo-Chr5:2463460 Cmo09g00636 Cmo-Chr9:3188960 0 dispersed
Cmo12g00116 Cmo-Chr12:684200 Cmo05g00510 Cmo-Chr5:2463460 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00510 Cmo_Chr05 FPKM 42.31773 44.288349 27.93573 26.162775 35.506886 38.855453 37.16885 29.464245 29.21505 30.128809