Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00514 ATGACCAACCAGAAACCGTCTCTCGCCAAATCCCGAATCGGCGCCGCCATAACAGCCGCAAGAATCGGCGGATTTGCAGCGAATATGTTAAAGAAGAAGCTTCTCAAAAGAACTGAAAATGGCGGATGCGGCGGTGGAGGCGGTGGCGGACGAGGAGGAGGAGGAGGAGGAGGAGGCAGAAACAGAGCCATTGCTTGCTCTGTTGATTTGATGAGAGCTTCATCTCCAACTCGTCTGAACTCAGCAATTTCTCTCTCCCAATCCACCGCTCAATCGCCACCATGGATTCTTCATCTCCCATCTGCACTCAACATGTTCGACGAAATTACAACCGCCTCAAAAGACAAACAAATCGTCATGTTCTTGGATTACGACGGCACTCTTTCCCCAATCGTTGAAGATCCCGACAGAGCATTCATGACCCATGAGATGAGAGCAGCCGTAAAGAACATCGCCGCCCATTTTCCCACCGCCATCGTCAGCGGAAGGCGTCGAGACAAGGTGTACGAGTTCGTAGGATTAGCAGAGCTGTTCTACGCAGGTAGCCATGGAATGGACATACAAGGCCCAACAAAAGGCTATAAATCCAAAAAAGGCAATGAAGCAGTGCTTTTCCAACCGGCAAGCGAGCTGCTACCCATGATTGACGAGGTACATAAAACGTTGTCAGAAATAACAAAGTCCATTACAGGGGCAAAAGTGGAAAACAATAAGTTCTGCATTTCTGTGCATTTTCGCTGCGTCGATGAAAAAAAATGGGCTGGATTAGCGGACCGAGTTAAATCCGTGGTTAATCAATATCCTAAATTGATTCTCACTTTAGGAAGAAAGGTACTTGAGATTCGACCTGCTATCAAATGGGATAAGGGCAAAGCTTTGGAATTCTTACTCGAGTCGTTAGGGTTTGCAAATTCTAGTGATGTTTTGCCGGTTTATATTGGAGATGATCGGACGGACGAGGATGCATTTAAGGTTTTGCAAAGTAAAGGATTAGGGTTTGGAATTTTAGTGTCGAAATTCCCTAAGGAAACTTGTGCTTCTTATTCCTTGCAAGAACCATCCGAGGTAGAAGAGTTTCTGTGTCGGCTGGTGAATTGGAAAAGATCAAAGGGATTTTCCCACTCCATCTGA 1131 46.33 MTNQKPSLAKSRIGAAITAARIGGFAANMLKKKLLKRTENGGCGGGGGGGRGGGGGGGGRNRAIACSVDLMRASSPTRLNSAISLSQSTAQSPPWILHLPSALNMFDEITTASKDKQIVMFLDYDGTLSPIVEDPDRAFMTHEMRAAVKNIAAHFPTAIVSGRRRDKVYEFVGLAELFYAGSHGMDIQGPTKGYKSKKGNEAVLFQPASELLPMIDEVHKTLSEITKSITGAKVENNKFCISVHFRCVDEKKWAGLADRVKSVVNQYPKLILTLGRKVLEIRPAIKWDKGKALEFLLESLGFANSSDVLPVYIGDDRTDEDAFKVLQSKGLGFGILVSKFPKETCASYSLQEPSEVEEFLCRLVNWKRSKGFSHSI 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2489720 2492021 + CmoCh05G005140.1 Cmo05g00514 382649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00514 376 TIGRFAM T6PP: trehalose-phosphatase 116 364 IPR003337 GO:0003824|GO:0005992
Cmo05g00514 376 SUPERFAMILY HAD-like 119 367 IPR036412 -
Cmo05g00514 376 Pfam Trehalose-phosphatase 121 354 IPR003337 GO:0003824|GO:0005992
Cmo05g00514 376 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 120 327 IPR006379 -
Cmo05g00514 376 Gene3D - 118 202 IPR023214 -
Cmo05g00514 376 Gene3D - 205 374 IPR023214 -
Cmo05g00514 376 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 63 370 - -
Cmo05g00514 376 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 63 370 IPR044651 GO:0004805|GO:0005992
Cmo05g00514 376 CDD HAD_TPP 119 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00514 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - csv:101223071 601.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00514 Cmo-Chr5:2489720 Cmo16g00745 Cmo-Chr16:3737926 3.63E-128 dispersed
Cmo05g00514 Cmo-Chr5:2489720 Cmo04g00865 Cmo-Chr4:4319682 1.19E-142 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g389 . . Bda01g00879 . . . . . Cmo05g00514 . . . . . Sed04g0134 . . Bhi04g00748 Tan02g2378 Cmetu03g2140 . Hepe10g0513 . Lcy13g1576 Cla08g01098 Cam08g1552 Cec08g1125 Cco08g1252 Clacu08g1254 . Cre08g1036 . . Cone17ag1228 Cone20ag0499 . . . Cme03g01512 Blo17g00124 Blo18g00136 . Bda13g01408 Bpe02g01116 Bpe14g00448 . Bma02g00147 . . . . Cma05g00491 Car05g00440 . Cpe11g00430 . . . . . . . . . . . . . . . Lsi08g00955 . Chy03g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000449 7 3 6 4 6 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 4 3 10 12 1 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00514 Cmo_Chr05 FPKM 0.0 0.0 0.245412 0.0 5.087679 4.050182 4.486357 0.0 0.0 0.0