Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00518 ATGAAATCCAGAAATAATCCCAAACCCAAATCCATGGCTCCGCCGGCGGACCTTCTCGTCTGTTTTCCGGCGAGGGCCCGCCTTACCCTTCTCCCAAAACCCACCTGCAGTCCGGCCAGAGCATCGGCGGAACCCCACCGCCGCCACCAGAAGAAAGCTCCGCCGCCGTCTCAGTCTCAAGCAAGTCCTCTTCTATGGGCCAAGGAGATGGCGTCGGAACCCACTTCGCCGAAGGTTACCTGCGCCGGCCAGATCAAAATTAAACCTCATGCTCGTCGGTCCACTAAGAACTGGCAATCTGTTATGGAAGAAATCGAACGAATTCATAAGAAAAAGAAAATACCCAATTGGGGAAACCAAATTCGAGATCAAAATCCGTTTGGTTTCAAGAGAGAAATCGTTAATTTCCTGTCGTGTTTACGAGGTTTCCGGTTTGATTTCCGTTGCTTCAGAGGCTTCCCTGAATCCGACGACATCACAACAGAGGAAGAAGACGAAGAAGAATATGAATCCGAAGCTGAATACGAAGAAGAACCCACCGAAGCTACTTCGAAAAGAAGAACAATGTTCTCGAAATGGTTCATGGTTCTACAAGACGAAGAAGAAGATGAAGAAGAAGAAACCAAACCCAGAAACGACACCGGCGAGCTGCAGCCTTGCTCTGTTCCGCCGCCAAATGCTCTGTTACTGATGCGTTGCAGGTCGGCGCCGTCAACCGGCTGGATTGAACGGAAACCAAAACAAGAACAACAAGAACAAGAACAAGAAGAAAAACAATCGAAAATCAGCTTGAAATTGTTAATGGAGGAGGAGAAAGTGGCAGTGGCTAAGAAGGAAAGCTTGGTGGTCATGGATTATGATGCTGATTTTTACAAGCTTTCATCGGATATTGCGAAAGAGACATGGGTCGTGAGTGGATCCAGTAGTAGTAGATGTAATGATGACCCATTTCTGAGAAGCCGGAGCTGGAAGAGATGA 978 47.96 MKSRNNPKPKSMAPPADLLVCFPARARLTLLPKPTCSPARASAEPHRRHQKKAPPPSQSQASPLLWAKEMASEPTSPKVTCAGQIKIKPHARRSTKNWQSVMEEIERIHKKKKIPNWGNQIRDQNPFGFKREIVNFLSCLRGFRFDFRCFRGFPESDDITTEEEDEEEYESEAEYEEEPTEATSKRRTMFSKWFMVLQDEEEDEEEETKPRNDTGELQPCSVPPPNALLLMRCRSAPSTGWIERKPKQEQQEQEQEEKQSKISLKLLMEEEKVAVAKKESLVVMDYDADFYKLSSDIAKETWVVSGSSSSRCNDDPFLRSRSWKR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2503542 2504519 + CmoCh05G005180.1 Cmo05g00518 382653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00518 325 MobiDBLite consensus disorder prediction 32 63 - -
Cmo05g00518 325 MobiDBLite consensus disorder prediction 199 226 - -
Cmo05g00518 325 MobiDBLite consensus disorder prediction 240 259 - -
Cmo05g00518 325 PANTHER OS09G0370000 PROTEIN 11 325 - -
Cmo05g00518 325 MobiDBLite consensus disorder prediction 158 183 - -
Cmo05g00518 325 MobiDBLite consensus disorder prediction 158 177 - -
Cmo05g00518 325 MobiDBLite consensus disorder prediction 245 259 - -
Cmo05g00518 325 MobiDBLite consensus disorder prediction 304 325 - -
Cmo05g00518 325 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 11 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00518 - - - cpep:111805493 536.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00518 Cmo-Chr5:2503542 Cmo09g00640 Cmo-Chr9:3205170 1.49E-57 dispersed
Cmo05g00518 Cmo-Chr5:2503542 Cmo16g00440 Cmo-Chr16:2102562 1.11E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g392 . . . . . . . . Cmo05g00518 . . . . . . . . . . . . . . . . . . . . . . Cone4ag1348 Cone7ag1583 Cone17ag1227 . . . . . . . . . . . . . . . . . . . . Cpe11g00433 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002119 3 1 2 1 2 1 3 2 2 2 2 2 4 2 2 2 2 3 4 2 2 2 2 2 2 1 2 3 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00518 Cmo_Chr05 FPKM 10.105491 10.169763 11.926266 13.138039 1.185939 0.594824 0.641574 0.0 0.0 0.2392