Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00530 ATGCTAAACGATGTCGTTCAGGATCAGATGCTCAAATACCACAACGGCGTTCTTCTCTCCGGCAAAATCAGTGTCAATCTGATTTGGTATGGAAATTTCAAGCCATCCCAGAAGGCGATCGTCTCCGATTTTGTGAACTCCCTGTCGTACTCCCGGTCTCAGGTCGGCGAGCCGTCGGTCACCACATGGTGGAAGATTACAGACAAGTATTACGCAATGTCTTCTAAGAAGAAATCAACTCCTCTGTTTTTGACCTCTGGACGGCAAATTCTCGATGAGAATTACTCGTTGGGGAAATCGCTCACCAACGAGCAAATCGCTCAATTGGCTTCAATGGGTGACCGGAAAAACGCGATTAATGTCGTTTTGACGGCTTCTGATGTCACCGTTGATGGGTTCTGTATGAGTCGATGTGGGACTCACGGCTCTGTATCCCACGGCGGCGCCAAGGGTAAAAATTATAAGTTCGCGTACATTTGGGTTGGGAATTCCGAGACCCAATGTCCAGGGCAGTGTGCTTGGCCATTTCACCAGCCGATGTACGGACCACAATCGCCGCCGTTAATTGCGCCGAACGGCGATGTGGGAATGGACGGTGTTGTTATTAACCTTGCAAGTCTTTTGGCTGGGACTGTCACTAACCCGTTTGGGAATGGCTACTTTCAAGGCCCGGCGGAAGCTCCATTGGAGGCGGCGTCGGCATGTACCGGCGTTTATGGGAAAGGGGCTTATCCTGGTTACGCCGGGGAGTTGTTGACGGACTCCATTACCGGCGGGAGCTATAATGCTAATGGCGCTAATGGAAGGAAGTACTTGCTGCCGGCGTTGTATGATCCTTCCACGGCGGCTTGCTCGACGTTGGTTTGA 867 51.33 MLNDVVQDQMLKYHNGVLLSGKISVNLIWYGNFKPSQKAIVSDFVNSLSYSRSQVGEPSVTTWWKITDKYYAMSSKKKSTPLFLTSGRQILDENYSLGKSLTNEQIAQLASMGDRKNAINVVLTASDVTVDGFCMSRCGTHGSVSHGGAKGKNYKFAYIWVGNSETQCPGQCAWPFHQPMYGPQSPPLIAPNGDVGMDGVVINLASLLAGTVTNPFGNGYFQGPAEAPLEAASACTGVYGKGAYPGYAGELLTDSITGGSYNANGANGRKYLLPALYDPSTAACSTLV 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2559518 2560384 + CmoCh05G005300.1 Cmo05g00530 382665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00530 288 PANTHER PROTEIN EXORDIUM-LIKE 5 5 288 IPR006766 -
Cmo05g00530 288 PANTHER PROTEIN EXORDIUM-RELATED 5 288 - -
Cmo05g00530 288 Pfam Phosphate-induced protein 1 conserved region 11 287 IPR006766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00530 - - - csv:101221106 501.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01658 Cmo05g00530 CCT
Cmo01g01658 Cmo05g00530 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00434 Cmo-Chr4:2154797 Cmo05g00530 Cmo-Chr5:2559518 1.74E-128 dispersed
Cmo05g00530 Cmo-Chr5:2559518 Cmo16g00266 Cmo-Chr16:1180675 7.54E-128 dispersed
Cmo20g00709 Cmo-Chr20:3498375 Cmo05g00530 Cmo-Chr5:2559518 8.50E-49 dispersed
Cmo01g01658 Cmo-Chr1:12556596 Cmo05g00530 Cmo-Chr5:2559518 4.09E-138 wgd
Cmo12g00126 Cmo-Chr12:778384 Cmo05g00530 Cmo-Chr5:2559518 1.02E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g424 . . Bda01g00889 . Bpe02g00113 . . . Cmo05g00530 . . . Car01g01230 Car12g00150 Sed04g0148 . Cpe07g00138 Bhi04g00770 Tan02g2401 Cmetu03g2126 . Hepe10g0490 . Lcy13g1554 Cla08g01116 Cam08g1572 Cec08g1142 Cco08g1269 Clacu08g1273 . Cre08g1054 . . . . Lsi04g02241 Csa03g04452 . . . . Bda11g00770 . Bpe02g01125 Bpe14g00457 . . . Cmo01g01658 . . Cma05g00504 Car05g00453 . Cpe11g00443 . Bhi09g02444 Tan01g3796 . . Hepe01g2133 . . . . . . . . . Lsi08g00972 Csa02g02156 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00530 Cmo_Chr05 FPKM 4.843967 3.874757 3.999743 4.947148 2.934039 1.62455 2.954144 0.854513 1.003066 1.322126