Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00531 ATGGAACAACAGCAGTGTCATCAAACCCTTTTATCGCCGGACTCTTCGTGCCCGCCGGCACCATCTTCTTCTTCCTCCTCCGCTCATGCTGATTCTACTGCGCCATGTGGAACCTGCCGCAAATGCGGCGGTCCTACCACCTTTGCTCCGCCGCCTCCTTCCTGGTCGTCGTCGGAAGTTTCACCGCCTCCAAACTATCGCCCTATTAGAGCTCCGGCGGTCAATCTCCCTCCGAATGAACAGTCTCGACAAGCCATAATTCTCTCTCCGGTTCCTCACTCGGAGAAGGTACTTCCCGTTTCGCCTCCTTTTCTTTTTCAAGCTCCTTCTAAGAAAATCCAATCGCCTGAAGATATCCGTAGCTTTAACGATTCTGATTCCGGCAAGAATTTCCTAGGCTTTATTGTCGCCCTCTCTGAATCCATGCGTGGTCACAAAATATCTGATCCTTGCCATCAATCGGACACCGTGAATACCATTATTTCAATGCTTTGCACTTTGATCGATTGGGTCGATGAAATTCCTCCCACGGAGCAAGCAGCTCGATATGGCAATATTTCGTATCGAACTTGGCACTCTCGCATGGTCGAAAACAGCGACGATTTCATGTTACGGTTTCTTCCCGACGATCAGAAATCCGCCACTGTTGAATTAGTCCCGTATTTCACTGATAGCTTCGGAAATTCGAGCCGTATCGATTACGGCACGGGCCACGAAACTAATTTCGCTGCCTGGTTTTATTGCATGGCGAGGTTGGGGGTTATTAAAGAAGAAGATTATCACGCTGTTGTGGCTAGAGTGTTCGTCAAGTACCTGGAATTGATGAGAAAGTTGCAATTGGTTTATTGTTTGGAGCCGGCGGGATCGCACGGGGTTTGGGGTCTTGACGACTACCACTTCTTACCTTTCATTTTCGGGTCCTCTCAGTTGATTGACCATAAATATATGAAACCGAAATCCATTCACAATCCGGATATCTTGGAAAACTTTTCTGCTGAGTATCTCTATCTCTCATGTATTGCTTTTGTGAAGAAAGTGAAGAAGGGTCTGTTTGCGGAGCACTCTCCTTTGCTGGATGATATCAGTGGGGTTCCTGCTTGGAAGAAGGTGAACAGTGGGTTGCTCAAAATGTATAAAGCGGAGGTGTTGGAGAAAGTTCCTATCATGCAGCATTTCCTCTTCGGCTCGCTCATCAAATGGTATGACCCTCTGGTGCATTCTCTTCATGTTTTACTACATTGA 1242 47.34 MEQQQCHQTLLSPDSSCPPAPSSSSSSAHADSTAPCGTCRKCGGPTTFAPPPPSWSSSEVSPPPNYRPIRAPAVNLPPNEQSRQAIILSPVPHSEKVLPVSPPFLFQAPSKKIQSPEDIRSFNDSDSGKNFLGFIVALSESMRGHKISDPCHQSDTVNTIISMLCTLIDWVDEIPPTEQAARYGNISYRTWHSRMVENSDDFMLRFLPDDQKSATVELVPYFTDSFGNSSRIDYGTGHETNFAAWFYCMARLGVIKEEDYHAVVARVFVKYLELMRKLQLVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNPDILENFSAEYLYLSCIAFVKKVKKGLFAEHSPLLDDISGVPAWKKVNSGLLKMYKAEVLEKVPIMQHFLFGSLIKWYDPLVHSLHVLLH 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2561802 2563043 + CmoCh05G005310.1 Cmo05g00531 382666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00531 413 SUPERFAMILY PTPA-like 106 402 IPR037218 GO:0019211
Cmo05g00531 413 Pfam Phosphotyrosyl phosphate activator (PTPA) protein 109 400 IPR004327 GO:0019211
Cmo05g00531 413 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B 84 402 IPR004327 GO:0019211
Cmo05g00531 413 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A ACTIVATOR 84 402 - -
Cmo05g00531 413 Gene3D - 295 407 IPR043170 -
Cmo05g00531 413 MobiDBLite consensus disorder prediction 1 33 - -
Cmo05g00531 413 MobiDBLite consensus disorder prediction 1 76 - -
Cmo05g00531 413 MobiDBLite consensus disorder prediction 46 71 - -
Cmo05g00531 413 CDD PTPA 131 395 IPR004327 GO:0019211
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00531 K17605 PPP2R4, PTPA; serine/threonine-protein phosphatase 2A activator - csv:101220873 711.064
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00531 Cmo09g00554 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01659 Cmo-Chr1:12558994 Cmo05g00531 Cmo-Chr5:2561802 7.28E-48 wgd
Cmo05g00531 Cmo-Chr5:2561802 Cmo09g00554 Cmo-Chr9:2643677 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g425 . . . . . . . . Cmo05g00531 . . Cma09g00565 . . . Cpe06g00429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00554 . . Car05g00454 . Cpe11g00444 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003204 2 3 1 1 1 1 1 2 2 1 1 2 1 1 2 2 2 2 2 2 2 2 1 2 2 2 2 3 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00531 Cmo_Chr05 FPKM 16.163752 15.802261 50.576904 43.553993 30.698761 36.616596 33.561684 69.424828 72.006927 70.044807