Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00534 ATGGCTGCCACCCCCTCTGTTCGTGAGGAGCATGTTTACATGGCCAAGCTTGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTTTCAGCTGCCATCGACAAGGAGGAGCTCACCGTCGAGGAGAGAAACCTCCTTTCTGTCGCCTACAAGAACGTTATCGGCGCTCGCAGGGCTTCCTGGCGCATCATTTCCTCCATTGAGCAGAAGGAGGAGAGCCGAGGCAACGCCGACCATGTCTCTGTGATCCGTGATTATAGATCCAAAATTGAGACCGAGCTCTCCAATATTTGCGATGGAATCCTCAAGCTCCTTGATTCCAGACTCATTCCCTCCGCCGTTTCCGGAGATTCCAAGGTTTTCTACCTCAAAATGAAGGGCGACTACCACAGATATCTGGCCGAATTCAAAACCGGAGCCGAACGGAAGGAAGCCGCCGAAAGCACTCTCACTGCTTACAAAGCCGCTCAGGTCTGCTTCGTTGATTTCCGATCCATGTCAATTCCTGCTACGTGCTTTCCGCTCGATAGATTTTCGTATTGCGATATCGCGAATGCGGAGTTGCCTCCTACACATCCTATCCGACTTGGATTGACCCTTAACTTCTCTGTATTCTACTACGAAATTTTGAATTCCCCTGATCGTGCCTGCAGTCTTGCAAAACAGGCGTTTGATGAAGCTATCGCTGAGTTGGATACCCTTGGCGAGGAATCCTACAAAGATAGTACTTTAATCATGCAACTTCTTCGCGACAACCTCACTCTCTGGACATCGGACATGCAGGATGATGGTGCGGATGAGATTAAAGAAGCTCCCCCCAAGCGTGAGGATGAAAAGCAGTGA 858 50.82 MAATPSVREEHVYMAKLAEQAERYEEMVEFMEKVSAAIDKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNADHVSVIRDYRSKIETELSNICDGILKLLDSRLIPSAVSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQVCFVDFRSMSIPATCFPLDRFSYCDIANAELPPTHPIRLGLTLNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAPPKREDEKQ 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2590599 2592504 + CmoCh05G005340.1 Cmo05g00534 382669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00534 285 SUPERFAMILY 14-3-3 protein 187 271 IPR036815 -
Cmo05g00534 285 MobiDBLite consensus disorder prediction 266 285 - -
Cmo05g00534 285 Gene3D - 1 275 IPR036815 -
Cmo05g00534 285 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cmo05g00534 285 Pfam 14-3-3 protein 14 162 IPR023410 -
Cmo05g00534 285 Pfam 14-3-3 protein 187 262 IPR023410 -
Cmo05g00534 285 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 186 277 - -
Cmo05g00534 285 SUPERFAMILY 14-3-3 protein 8 162 IPR036815 -
Cmo05g00534 285 PANTHER 14-3-3 PROTEIN 5 162 IPR000308 -
Cmo05g00534 285 PANTHER 14-3-3 PROTEIN 186 277 IPR000308 -
Cmo05g00534 285 SMART 1433_4 8 275 IPR023410 -
Cmo05g00534 285 ProSitePatterns 14-3-3 proteins signature 2. 244 263 IPR023409 -
Cmo05g00534 285 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 5 162 - -
Cmo05g00534 285 PIRSF 14-3-3 2 173 IPR000308 -
Cmo05g00534 285 PIRSF 14-3-3 183 274 IPR000308 -
Cmo05g00534 285 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Cmo05g00534 285 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cmo05g00534 285 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cmo05g00534 285 Coils Coil 14 34 - -
Cmo05g00534 285 MobiDBLite consensus disorder prediction 267 285 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01661 Cmo05g00534 CCT
Cmo05g00534 Cmo09g00555 CCT
Cmo05g00534 Cmo12g00129 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00534 Cmo-Chr5:2590599 Cmo14g01165 Cmo-Chr14:9444790 1.17E-154 dispersed
Cmo01g01661 Cmo-Chr1:12565115 Cmo05g00534 Cmo-Chr5:2590599 2.79E-170 wgd
Cmo12g00129 Cmo-Chr12:795393 Cmo05g00534 Cmo-Chr5:2590599 3.79E-180 wgd
Cmo05g00534 Cmo-Chr5:2590599 Cmo09g00555 Cmo-Chr9:2651002 4.88E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00534 K06630 - csv:101220164 483.796