Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00540 ATGGCTTACTCCTCCAAAACTGCATTTTTTGCCTTAGCCACCATTGCCATTTCCATGGCTATCCCAACCTTTGCCACTGTCCACACTGTTGGCGACACCGCTGGTTGGTCCACCGGCGTCGACTACCCCTCTTGGTCCTCCGGGAAAATCTTCACCGTAGGCGACACATTGGTGTTCAATTATGGGGGTGGGCACACGGTGGACGAAGTGAGTGCTAGCGAGTACACCTCTTGTACGGCCGCCAATTCCATTAGTAGCGACAGCTCTGGCGCCACGTCCATCACTCTCAAGAAGCCTGGCACTCATTACTTCATTTGTGGTGCATTTGGTCACTGTGGCAACGGTATGAAGCTAGCGGTCACAGCTGCCGAAGCTGGAGGTCCCCCCTCTATAGCCTCAGCTCCCATTGGTGATGGACTTCCACCGTCCGAAGCGCCAAGTTCTGTTGGAGCTACTGCTCCTGTGACGCCATTGGTTGGTGCTACTCCCAAAGATGCGGACTCCTCATTGGTGAACTCTCCCACGTCTAAGGTTCCCGTGGAGGCATCTTCCGCTTGTGGCGCCTCTGCGTTTGCAGCCGTGGTTTGCACTTGGGGCGCCGCCACCCTGGGCTTGTTGGCTGCGCTTTAG 630 56.19 MAYSSKTAFFALATIAISMAIPTFATVHTVGDTAGWSTGVDYPSWSSGKIFTVGDTLVFNYGGGHTVDEVSASEYTSCTAANSISSDSSGATSITLKKPGTHYFICGAFGHCGNGMKLAVTAAEAGGPPSIASAPIGDGLPPSEAPSSVGATAPVTPLVGATPKDADSSLVNSPTSKVPVEASSACGASAFAAVVCTWGAATLGLLAAL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2612412 2613287 - CmoCh05G005400.1 Cmo05g00540 382675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00540 209 Pfam Plastocyanin-like domain 36 116 IPR003245 GO:0009055
Cmo05g00540 209 PANTHER BLUE COPPER PROTEIN-LIKE 15 200 - -
Cmo05g00540 209 SUPERFAMILY Cupredoxins 24 122 IPR008972 -
Cmo05g00540 209 CDD Phytocyanin 26 122 - -
Cmo05g00540 209 Gene3D - 24 126 IPR008972 -
Cmo05g00540 209 ProSiteProfiles Phytocyanin domain profile. 26 124 IPR003245 GO:0009055
Cmo05g00540 209 MobiDBLite consensus disorder prediction 132 152 - -
Cmo05g00540 209 PANTHER BLUE COPPER PROTEIN 15 200 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00540 - - - cpep:111805957 371.318
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01674 Cmo05g00540 CCT
Cmo05g00540 Cmo09g00563 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00540 Cmo-Chr5:2612412 Cmo15g01242 Cmo-Chr15:8540262 1.73E-28 dispersed
Cmo15g01241 Cmo-Chr15:8537369 Cmo05g00540 Cmo-Chr5:2612412 6.67E-22 dispersed
Cmo20g00135 Cmo-Chr20:690083 Cmo05g00540 Cmo-Chr5:2612412 3.96E-14 dispersed
Cmo15g01424 Cmo-Chr15:9691580 Cmo05g00540 Cmo-Chr5:2612412 7.54E-27 transposed
Cmo20g00742 Cmo-Chr20:3708718 Cmo05g00540 Cmo-Chr5:2612412 8.65E-24 transposed
Cmo01g01674 Cmo-Chr1:12638324 Cmo05g00540 Cmo-Chr5:2612412 1.60E-50 wgd
Cmo05g00540 Cmo-Chr5:2612412 Cmo09g00563 Cmo-Chr9:2731753 1.09E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g453 . Blo12g00715 . Bda03g00478 Bpe02g00124 Bpe04g00433 Bma04g00446 Bma01g02602 Cmo05g00540 . Cma01g01628 Cma09g00579 . . . Cpe06g00440 . Bhi04g00926 . . . Hepe10g0421 . Lcy13g1473 Cla08g01130 Cam08g1587 Cec08g1157 Cco08g1283 Clacu08g1287 . Cre08g1069 . . Cone17ag1202 Cone20ag0526 Lsi04g02258 Csa03g04469 Chy04g00232 Cme03g01843 . . Bda11g00779 Bda13g01385 Bpe02g01525 Bpe14g00466 Bma01g00937 . Sed05g1577 Cmo01g01674 Cmo09g00563 . Cma05g00513 Car05g00463 Car09g00507 . Cpe02g00356 Bhi09g02470 Tan01g3819 Cmetu04g3088 . Hepe01g2150 . . Cla11g01403 Cam11g1460 Cec11g1487 Cco11g1484 Clacu11g1621 Cmu11g1438 Cre11g1857 Lsi08g00986 Csa02g02171 Chy03g01346 Cme04g00259
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002164 3 2 2 2 3 1 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 1 3 3 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00540 Cmo_Chr05 FPKM 4.323454 4.003042 4.430706 4.268737 5.928188 6.351676 6.239785 5.202172 5.558277 5.940208