Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00542 ATGGCGGTCGGAATTACCAGAAAGCTTTTCCCCGTCGCAGCTGGAACTCACCAACAAAGCTTCAATTGTTCTGCCTGCCCTTACGACTGCCCTTTCGACTGCTTAGATCTCCCAGATTTCTACTTCTCGCCGCCGCCGCCGCTGCCGCTGCCGCCTTTTGGCGACCACCAAAAACAGCTTCCAACTATAGTCATCGTCATACTTGCTCTGTTTGTTGGGTTCTTCTTCACTTTTAGTTTCTACATCATTATAGTAAAATGCCAAGCTTGGCGTAGCGGCTCCGGCAACCAAGGGGCGGAGGCGTCGCAATTGAACGGCGAAGATGGAGAATTTCTAAACGAGAATCAAGTCGATCATCCCATTTGGTTCATAACCACCGTCGGGCTGCAACAATCGATCATCAACTCAATCACGGTTTGCAAATACAAGAAAGGTGAGGGCTTGATCGAAGGAACAGTTTGCTCTGTTTGTTTGAATGAATTTCAAGAAGACGAAATGCTCCGGCTGTTACCCAAATGTAGCCACGCGTTTCATATTGGGTGCGTTGATACTTGGCTGAGGACTCATACCACTTGCCCACTCTGTCGGGCCCATATTCTTACTGATTTTCCGACCTCCAACGCCGCGAGACCGCCGAATTCGGGTCATTTGAATCAAAACGAAGCTAATTTGGGTGTAATTGAAGAGACCCAGATGGAGAATTTGGAGGGGGAAGAACAGAGTGCTGTGTCCGGCGGCGGCGGCGTTGAAAACAGAGGAGATGCAGTTTATGAACAGAGAGACATTGGGGTTCCTCAGATTGGGGAGATTGTTCCAAAAGAAGGGGTTTTTGAATCCGATGATTCTAAAATGGAAGTAACTGAAACAATGATGAACTGTTCTTCTGCAACATGA 894 47.99 MAVGITRKLFPVAAGTHQQSFNCSACPYDCPFDCLDLPDFYFSPPPPLPLPPFGDHQKQLPTIVIVILALFVGFFFTFSFYIIIVKCQAWRSGSGNQGAEASQLNGEDGEFLNENQVDHPIWFITTVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDFPTSNAARPPNSGHLNQNEANLGVIEETQMENLEGEEQSAVSGGGGVENRGDAVYEQRDIGVPQIGEIVPKEGVFESDDSKMEVTETMMNCSSAT 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2619017 2619910 + CmoCh05G005420.1 Cmo05g00542 382677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00542 297 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Cmo05g00542 297 SUPERFAMILY RING/U-box 147 205 - -
Cmo05g00542 297 SMART ring_2 154 195 IPR001841 -
Cmo05g00542 297 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 282 - -
Cmo05g00542 297 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 282 IPR044675 -
Cmo05g00542 297 Pfam Ring finger domain 153 196 IPR001841 -
Cmo05g00542 297 CDD RING-H2_PA-TM-RING 153 196 - -
Cmo05g00542 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 202 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00542 - - - csv:101209492 404.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00542 Cmo-Chr5:2619017 Cmo19g00246 Cmo-Chr19:1728060 3.03E-47 dispersed
Cmo08g01186 Cmo-Chr8:7540198 Cmo05g00542 Cmo-Chr5:2619017 3.43E-06 dispersed
Cmo19g00845 Cmo-Chr19:8218821 Cmo05g00542 Cmo-Chr5:2619017 2.86E-13 dispersed
Cmo03g00868 Cmo-Chr3:6774014 Cmo05g00542 Cmo-Chr5:2619017 8.10E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00542 Cmo_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.534149 0.0