Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00543 ATGGCGTTGGAAGCGGTGGTTTTCCCACAAGATCCATTTACTTATGTTTGCAGGGATGTCTGTTCTCACGGCGGAGGAGGAGCTTGGGCTGGCTATGATCATGGCTTCCAATTAGAACAACAAAAACCCTTTCTTGGAGTGCCTGAAACTCAAACAGAGGACACAAAATTCGCAGGGAATTGGGAGGCTTCACCGGAGGAATGTTCGATTAATCAGCCTATTCCCGGAGGAGCTCTCTACACGCCGCCGTGTACAGGAAGAAGAAAGCGACGGCGGACACGGAGCACAAAAAACAGAGAGGAAATTGAAAACCAGAGGATGACACATATCGCGGTGGAGCGCAACCGTCGGAAACAAATGAATGAGTATCTAGCGATTCTCCGATCATTAATGCCGTCGTCTTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGCGCCATTAATTTCGTCAAGGAATTAGAGCAACAACTGCAGTTCATCAACACCCATAAGAACACAATCGAAAATGGCGGTTCCCCTTTTGCTGAATTCTTTTCCTTCCCTCAATACTCAACCAAGAACACGGCACATGACTCATCCATTACTCATACCCAGTGGCCGGCCGGTGATATTGAAGTCACCATGATTGATACCCATGCCAACCTTAAAATACTGTCGCCAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTCACTGTTCTTCATCTCAATGTCACTACTTCAGATCAAATGGTTCTTTATTCTCTAAGCATTAAGGTTGAAGAAGGGTGTCAGTTGAATACAGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTGCTGTTTATTCAAGAGGAAGCTGCTTTAAATTGA 879 45.51 MALEAVVFPQDPFTYVCRDVCSHGGGGAWAGYDHGFQLEQQKPFLGVPETQTEDTKFAGNWEASPEECSINQPIPGGALYTPPCTGRRKRRRTRSTKNREEIENQRMTHIAVERNRRKQMNEYLAILRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFINTHKNTIENGGSPFAEFFSFPQYSTKNTAHDSSITHTQWPAGDIEVTMIDTHANLKILSPKRPRQLLKMVAGFQSLRLTVLHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLFIQEEAALN 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2622030 2623687 - CmoCh05G005430.1 Cmo05g00543 382678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00543 292 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 292 - -
Cmo05g00543 292 PANTHER MAX DIMERIZATION, MAD 1 292 - -
Cmo05g00543 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 172 IPR036638 GO:0046983
Cmo05g00543 292 Pfam Helix-loop-helix DNA-binding domain 105 156 IPR011598 GO:0046983
Cmo05g00543 292 Gene3D - 98 168 IPR036638 GO:0046983
Cmo05g00543 292 CDD bHLH_AtFAMA_like 107 176 - -
Cmo05g00543 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983
Cmo05g00543 292 SMART finulus 110 161 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00543 - - - csv:101218813 436.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01663 Cmo-Chr2:9566081 Cmo05g00543 Cmo-Chr5:2622030 1.11E-67 dispersed
Cmo05g00543 Cmo-Chr5:2622030 Cmo05g01165 Cmo-Chr5:9203927 3.25E-90 dispersed
Cmo06g00953 Cmo-Chr6:7429841 Cmo05g00543 Cmo-Chr5:2622030 5.74E-56 transposed
Cmo14g02236 Cmo-Chr14:15865527 Cmo05g00543 Cmo-Chr5:2622030 3.01E-55 transposed
Cmo12g00180 Cmo-Chr12:1176011 Cmo05g00543 Cmo-Chr5:2622030 7.49E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g459 . . . . . . . . Cmo05g00543 . . . . . Sed08g1674 . . Bhi04g00791 Tan02g2427 Cmetu03g0550 . Hepe10g0469 . Lcy13g1533 Cla08g01134 Cam08g1591 Cec08g1161 Cco08g1287 Clacu08g1291 . Cre08g1073 Cone4ag1316 Cone7ag1260 Cone17ag1201 Cone20ag0528 . . . Cme03g01839 . . . . . . . . . . . . Cma05g00515 Car05g00466 . Cpe11g00455 . . . . . . . . . . . . . . . Lsi08g00990 Csa02g02175 Chy03g01342 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010750 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9820 PF00010 HLH 2.50E-10 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00543 Cmo_Chr05 FPKM 9.504361 11.122811 40.107124 38.78587 7.022501 8.312375 8.524105 32.56514 31.079618 33.926556