Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00546 ATGGAGGCCCTTGTGAAGGCGGATGCGGCGGCGGATCTTAACCAGGCGTTGATTCGAAGGGATGAAGATCGACCTCGTCGGTCGGAGGAGCTATGGTCGAAGTTATGGGTTGAAACCCAGAAGCTATGGCTAATTGTTGGCCCGACTATTTTCGCCCGTGTTGCGACTTTCTCTATGAATGTTATAACCCAAGCGTTTGCGGGTCATCTTGGTGATGTTGAACTCGCTTCCATTTCGATTGCTAATACTGTTATTGTTGGGTTCAATTTTGGGCTATTGTTGGGTATGGCGAGTGCATTGGAGACGCTATGTGGGCAAGCGTATGGAGCTAAGAGGTTTCATATGTTGGGGATTTACTTGCAGCGGTCGTGGATAATGCTGTTCTTGTGTTGCTTTTTGTTACTTCCCTTTTATGTTTATGCTACTCCGGTTCTGAAAATGCTGGGACAGGCGGAGGATGTGGCGGAGCTATCTGGGGTGGTGGCGATTTGGTTAATACCACTTCATTTTAGCTTTGCGTTTCAGTTTCCATTGCAGGTGTTCTTGCAGTGCCAGCATAAGACCCTTGTGATAGCTTGGGTGTCTTTGGTGGGGTTGGTGGTGAATGTTGTCACCAGTTGGCTGTTCATTTATGAGTTGCAGCTTGGTGTCATTGGGGCTGCTATTGCTCTTGATATTTCTTGGTGGGTTTTGGGTTTGGGGTTGTATTTCTATACTGTTGGGGGTTGGTGTCCTTTGACATGGACTGGATTCTCTGTTAAAGCCTTCCATGGACTTTGGGAGTTTCTTAAACTCTCCATTGCTGCTGGCCTCATGCTCTGCTTGGAGAATTGGTACTTTCGAATCCTCGTATTGATGACCGGAAATCTCGAAAATGCTACGATCGCTGTTGATGCCTTATCCGTGTGCATGAGCATCAATGGCTGGGAGATGATGATCCCTGTAGCCTTCTTAGCTGGTGTCGGAGTAAGAGTGGCAAACGAGCTTGGAGCTGGCAACGGGAAAGCAGCCAAATTTGCAACAATCGTATCAGTGGCACAGTCAACAGTGATTGGAATAGCAATATGTGTTGTCATAGTGCTATTCCATGGCAAGATAGCACTGATCTTCTCAAGCAGCAGAGACGTAGTGGAAGCAGTGGATTCCCTCTCCAATCTGCTAGCCATTACCATCCTCTTAAACAGCATCCAACCAGTTCTTTCAGACATTAGATGGGATATTGCAGGCGTGGCTGTTGGATCAGGCTGGCAAGCTTGGGTAGCATACATAAACCTCGGATGCTATTATGGTATAGGTCTCCCACTTGGTTTCGTCATGCAATGGTATTACAAATCGGGCGTATCGGGCATTTGGGGAGGGATGTTGTTTGGAGGAAGTGCGTTTCAAACTCTGATATTGATCATCATAACCATTAGAACCGACTGGGAAAAAGAGGTAACAATTAATGGAATTGGTGTGTTTATAATGGAAGCTGTGAAGGCATTGAAGCACGTAGAGGAGTGGTCGACACCTCAGGACAACGAGAAGCTTCTTCTGGCGTAA 1542 46.89 MEALVKADAAADLNQALIRRDEDRPRRSEELWSKLWVETQKLWLIVGPTIFARVATFSMNVITQAFAGHLGDVELASISIANTVIVGFNFGLLLGMASALETLCGQAYGAKRFHMLGIYLQRSWIMLFLCCFLLLPFYVYATPVLKMLGQAEDVAELSGVVAIWLIPLHFSFAFQFPLQVFLQCQHKTLVIAWVSLVGLVVNVVTSWLFIYELQLGVIGAAIALDISWWVLGLGLYFYTVGGWCPLTWTGFSVKAFHGLWEFLKLSIAAGLMLCLENWYFRILVLMTGNLENATIAVDALSVCMSINGWEMMIPVAFLAGVGVRVANELGAGNGKAAKFATIVSVAQSTVIGIAICVVIVLFHGKIALIFSSSRDVVEAVDSLSNLLAITILLNSIQPVLSDIRWDIAGVAVGSGWQAWVAYINLGCYYGIGLPLGFVMQWYYKSGVSGIWGGMLFGGSAFQTLILIIITIRTDWEKEVTINGIGVFIMEAVKALKHVEEWSTPQDNEKLLLA 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2635259 2638316 - CmoCh05G005460.1 Cmo05g00546 382681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00546 513 TIGRFAM matE: MATE efflux family protein 48 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo05g00546 513 PANTHER PROTEIN DETOXIFICATION 22 484 - -
Cmo05g00546 513 CDD MATE_eukaryotic 38 479 IPR045069 GO:0042910|GO:1990961
Cmo05g00546 513 Pfam MatE 48 208 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo05g00546 513 Pfam MatE 270 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo05g00546 513 PANTHER MULTIDRUG RESISTANCE PROTEIN 22 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00546 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101218581 725.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00546 Cmo-Chr5:2635259 Cmo16g00785 Cmo-Chr16:3974587 0 dispersed
Cmo12g00179 Cmo-Chr12:1160325 Cmo05g00546 Cmo-Chr5:2635259 0 wgd
Cmo03g00871 Cmo-Chr3:6794344 Cmo05g00546 Cmo-Chr5:2635259 4.29E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g464 . . . . . . . . Cmo05g00546 . . . . . Sed08g0776 . . Bhi04g00794 Tan06g0276 Cmetu02g1119 . Hepe10g0465 . Lcy13g1529 Cla08g01136 Cam08g1594 Cec08g1164 Cco08g1291 Clacu08g1294 . Cre08g1076 Cone6ag1543 . Cone8ag0208 . . . . Cme03g01836 Blo17g00108 . . . . . . . . . . . Cma05g00517 Car05g00469 . Cpe11g00458 . . . . . . . . . . . . . . . Lsi08g00993 Csa02g02178 Chy03g01339 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00546 Cmo_Chr05 FPKM 1.712904 1.649771 5.213088 4.909978 4.414677 3.890318 4.246291 3.960024 3.13382 4.260086