Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00550 ATGAACTCGAACGACAGAAACGAAAGAAATTCGCCGGTCGCCGGCAAAGTACGGTGTTCCGTGCTCCCACAGACCGGGCCTCTGGAGGGCAATATTTATACCTTCGGTTTTTTTGGACCCACAAAAGGGAAGACCATTGTATACCTTTGTGCCAATGCGCACACAAAGCAATCGATGACTCGGTGGCTCGGCGCTTCAGAGGTCGCCGCTCGAACGAAATCGGTGATGAAGACGACTCTCCGCTCCGGCACCGGACGAATTAATTTTCTTCTCCGAGCATGGAGGCCTATATCGTCACATACTTCGCCAGTCGACTCTTCGGACATCATTTCTGCCGTATCTCCCAAAACCCTACAAAAAGGTGGCGACAATGGCAACTTCAAGCAGGACTTTATGAAGCTCAAGCAACCTCGGAGTAGCGTGACCACCGTACTTCAGAGTGGTAACAGTGAAGCTCAAAGAACCTCAATCACTAAGCTCCGGCGTGTTGTCAAGAAGCTCTGCAAACCGAAGCGATTTGAGCGTGCACTAGAGGTACTAATGTTGATGGAAACTCAAAATAAGATCCGTATGTCCCCGGCTGATCATGCTCTCCGATTGGAATTGACCATCAAAGTGCACGGTTTGCTGAAAGCTGAAGAACACTTCAATCAATTGCCCAACATAGCCTCTCAGAAAGCTTCATCTCTCCTTCTTCTTCATGGTTATGTCAAAGAGAAGAACACAGAGAAAGCTGAGGCTTTCATGGCAAAGCTAAAGGGCTTGGGACTGGTTGTGGATCCGCATCTTTACAATGAGATGATGAAACTGTATGTCGCCACATCTCAAAATGAGAAAGTTCCTCTTGTTATAAAGGACATGAAGCAAAATCACATACTGAGAAATGTTCTCTCCTACAATCTTTGGATGAATGCTTGCAGTGAGCTATATGGGTTTAGGTCAGTGGAATTGGTGTATGAAGAAATGCTGAGTGATAAGAATGTTCAAGTGGGATGGAGCACTCTATCTACCCTGGCTAAAGTGTATACACAGGCAGGCCTTGTTCACAAAGCGTTTGCAGCCTTGAAAGCTGCAGAGAAGAAGCTATCCTCAGGTAACAGGCTTGGATATTTCTTCTTAATTACATTATATGCCACTTTGAACGACAAGGAGGGAGTTCTTCGAGTTTGGACAGCTAGTAAAGCTGTAAGTGACAGACCCACTTGTGCCAACTACATGTGTATATTGCTATGTTTGGTGAAGCTAGGAGATCTCAACGAGGCAGAGAAAATATTTAAGGAATGGGAGCTCGATTGTCGTAATTATGACATTAGAGTCTCCAATGTTCTTCTGGGCGCATATGTGAGGAATGGATTGTTAGAGAAGGCCGAGTCGTTACATATGCACACATTAGAGAGAGGTGGTACTCCGAATTATAAGACATGGGAGATTCTCATGGAGGGATGTGTGAGAAGCCAAAACTTGGACAGAGGTATTAATTTTCTCGAGAACAATTTTGCTGGGTTGAAATGTCATGATTAA 1521 45.17 MNSNDRNERNSPVAGKVRCSVLPQTGPLEGNIYTFGFFGPTKGKTIVYLCANAHTKQSMTRWLGASEVAARTKSVMKTTLRSGTGRINFLLRAWRPISSHTSPVDSSDIISAVSPKTLQKGGDNGNFKQDFMKLKQPRSSVTTVLQSGNSEAQRTSITKLRRVVKKLCKPKRFERALEVLMLMETQNKIRMSPADHALRLELTIKVHGLLKAEEHFNQLPNIASQKASSLLLLHGYVKEKNTEKAEAFMAKLKGLGLVVDPHLYNEMMKLYVATSQNEKVPLVIKDMKQNHILRNVLSYNLWMNACSELYGFRSVELVYEEMLSDKNVQVGWSTLSTLAKVYTQAGLVHKAFAALKAAEKKLSSGNRLGYFFLITLYATLNDKEGVLRVWTASKAVSDRPTCANYMCILLCLVKLGDLNEAEKIFKEWELDCRNYDIRVSNVLLGAYVRNGLLEKAESLHMHTLERGGTPNYKTWEILMEGCVRSQNLDRGINFLENNFAGLKCHD 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2659189 2661233 + CmoCh05G005500.1 Cmo05g00550 382685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00550 506 PANTHER OS02G0796400 PROTEIN 100 504 - -
Cmo05g00550 506 Pfam Pentatricopeptide repeat domain 252 306 IPR002885 -
Cmo05g00550 506 Gene3D Tetratricopeptide repeat domain 375 501 IPR011990 GO:0005515
Cmo05g00550 506 Gene3D Tetratricopeptide repeat domain 157 374 IPR011990 GO:0005515
Cmo05g00550 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Cmo05g00550 506 PANTHER OS12G0527900 PROTEIN 100 504 - -
Cmo05g00550 506 Pfam PPR repeat 441 462 IPR002885 -
Cmo05g00550 506 Pfam PPR repeat 405 428 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00550 - - - bhj:120075607 705.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00550 Cmo-Chr5:2659189 Cmo06g01190 Cmo-Chr6:9072689 9.71E-69 dispersed
Cmo05g00550 Cmo-Chr5:2659189 Cmo08g00352 Cmo-Chr8:2177671 2.48E-68 transposed
Cmo05g00550 Cmo-Chr5:2659189 Cmo18g00344 Cmo-Chr18:2258000 3.27E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g471 . . . . . . . . Cmo05g00550 . . . . . Sed04g0176 . . Bhi04g00800 Tan02g2436 Cmetu03g0383 . Hepe10g0460 . Lcy13g1510 Cla08g01140 Cam08g1599 Cec08g1170 Cco08g1297 Clacu08g1299 . Cre08g1082 . . Cone17ag1195 . . . . Cme03g01832 . . . Bda13g01373 . Bpe14g00471 . . . . . . Cma05g00521 Car05g00472 . Cpe11g00462 . . . . . . . . . . . . . . . Lsi08g00998 Csa02g02182 Chy03g01335 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012851 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00550 Cmo_Chr05 FPKM 4.696078 4.67049 8.912821 6.750377 1.534819 1.476633 1.692286 16.618773 13.012904 14.439711