Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00553 ATGGGCAGCGAGAGTAACATTCAAAGAAAACCTAGAATTTTGTGCCTTCATGGCTTCCGAACCAGTGGAGCAATCTTGAAGAAGCATGTCGAGAAATGGCCGACTTCCGTCCTCGATCAATTCGATTTCCATTTTATGGACGCTCCATTCCCTTCCAGAGGAAAATCCGAAGTCGAAGGACTTCACGATCCTCCCTATTTCGAGTGGTTTCAATTCCACGAGGACACGGCCGATTTTGCAAATGTCGAGGAATGCCTTCAATTCATCGAGAATCACATGCTTGAGCACGGACCATTCGACGGACTACTCGGCTTCTCACAGGGAGCGGCGTTGGCGGCCTTACTGCCGGGATTTCAAGCGAAGGTAAACACTCCAGCCGCTTGGCCTGGCTATTGTTGTAAATCTCTGTTTCAATTTTCCAGAATGAAATTGAATCGGTTGCGGCAGGGTGTGGCGCTGACGAGAGTCCCTAAGATCAAATTCGTAATCATCATCAGCGGTGTGAAACTGGAATCGCCATCTCTGGACGCTCAAGAAGCGTCTGCCTCATCCATCGCATGCCCCTCCCTCCATTTTCTAAGTGAGGAAGACTTCTTCATGCCCAGTGGATTGCAGCTGCTGGAATCATTTGTTGAACCATTTGTAATCAATCATCTCAAAGGCCACACAGTACCTAAACTTGGTAATCTTCAATTCATTCCTCAAATATACATCCTTATTGCTCTTCTTATGAGAATTCCAATCATGGGAACCGACGGTGAAATCCGAAGAAAACCTAGATTTCTTTGCCTCCATGGCTTCCGAACCAGTGGAGCAATCCTTAAGAAGCAGGTCGGAAAATGGCCGGATTCTGTCCTTGAACAACTCGATCTGGATTTTCTCGATGCTCCATTTCCTGCCGAAGGCAAATCTGACATCGAAGGAATTTTTGATCCTCCCTATTTCGAGTGGTTTCAATTCAGTCCAGAATTTACAGAGTATAGGAATTTCGATGAGTGTCTCTCATTCATTGAGGATTACATGCTTAAGCACGGACCATTCGATGGATTCCTCGGTTTCTCACAGGGGGCGATACTATCGGCCGCTCTGCCGGGACTTCAAGCGAAGGGTATTGCACTGACGAAAGTCCCCAAGATCAAATTCGTGATCATCGTCAGCGGTGCGAAATTCAGATCGCAATCTGTGGCTGAGAAAGCTTACTCGCCAGTCATTGGATGCCCATCCCTCCATTTTCTAGGTAAGGAAGATTTCTTGATGCCCCACGGACAGAAGCTTCTGGAATCATATATAGAGCCAGTAATAATTAATCATCCTAAAGGCCACACAATACCAAGACTGGATGATGAAGGTTTGGAGGTTATGGAGAGTTTCATTGAGAAGATTTCAAAGATGTTGGATGAGGCAGAAGAATAA 1413 46.14 MGSESNIQRKPRILCLHGFRTSGAILKKHVEKWPTSVLDQFDFHFMDAPFPSRGKSEVEGLHDPPYFEWFQFHEDTADFANVEECLQFIENHMLEHGPFDGLLGFSQGAALAALLPGFQAKVNTPAAWPGYCCKSLFQFSRMKLNRLRQGVALTRVPKIKFVIIISGVKLESPSLDAQEASASSIACPSLHFLSEEDFFMPSGLQLLESFVEPFVINHLKGHTVPKLGNLQFIPQIYILIALLMRIPIMGTDGEIRRKPRFLCLHGFRTSGAILKKQVGKWPDSVLEQLDLDFLDAPFPAEGKSDIEGIFDPPYFEWFQFSPEFTEYRNFDECLSFIEDYMLKHGPFDGFLGFSQGAILSAALPGLQAKGIALTKVPKIKFVIIVSGAKFRSQSVAEKAYSPVIGCPSLHFLGKEDFLMPHGQKLLESYIEPVIINHPKGHTIPRLDDEGLEVMESFIEKISKMLDEAEE 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2666020 2670354 + CmoCh05G005530.1 Cmo05g00553 382688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00553 470 SUPERFAMILY alpha/beta-Hydrolases 257 448 IPR029058 -
Cmo05g00553 470 SUPERFAMILY alpha/beta-Hydrolases 9 203 IPR029058 -
Cmo05g00553 470 Gene3D alpha/beta hydrolase 255 466 IPR029058 -
Cmo05g00553 470 Gene3D alpha/beta hydrolase 7 237 IPR029058 -
Cmo05g00553 470 PANTHER ESTERASE OVCA2 148 231 - -
Cmo05g00553 470 PANTHER DIHYDROFOLATE REDUCTASE 6 121 - -
Cmo05g00553 470 Pfam Serine hydrolase (FSH1) 9 227 IPR005645 -
Cmo05g00553 470 Pfam Serine hydrolase (FSH1) 257 448 IPR005645 -
Cmo05g00553 470 PANTHER DIHYDROFOLATE REDUCTASE 148 231 - -
Cmo05g00553 470 PANTHER DIHYDROFOLATE REDUCTASE 253 468 - -
Cmo05g00553 470 PANTHER ESTERASE OVCA2 6 121 - -
Cmo05g00553 470 PANTHER ESTERASE OVCA2 253 468 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00553 - - - dcr:108224120 513.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00553 Cmo-Chr5:2666020 Cmo12g00177 Cmo-Chr12:1148897 1.63E-52 dispersed
Cmo11g01284 Cmo-Chr11:8532919 Cmo05g00553 Cmo-Chr5:2666020 1.92E-12 transposed
Cmo12g00175 Cmo-Chr12:1144768 Cmo05g00553 Cmo-Chr5:2666020 1.65E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g475 . . . . . . . . Cmo05g00553 . . . . . . . . Bhi04g00803 Tan02g2441 . . Hepe10g0454 . Lcy13g1507 Cla08g01143 Cam08g1603 Cec08g1174 Cco08g1300 Clacu08g1302 . Cre08g1086 . . . . . . . Cme03g01830 Blo17g00105 . . Bda13g01372 . Bpe14g00474 . Bma02g00122 . . . . Cma05g00524 Car05g00474 . Cpe11g00463 . . . . . . . . . . . . . . . Lsi08g01001 Csa02g02185 Chy03g01333 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000767 4 3 2 2 4 4 2 3 4 3 3 3 3 3 3 4 3 3 2 4 3 1 3 4 2 3 3 3 4 3 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00553 Cmo_Chr05 FPKM 101.647621 112.014526 1.947728 2.245366 430.617981 337.169769 408.596832 0.298174 0.173456 0.284093