Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00554 ATGAGTCAATCTCAGCCACAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCACCCCGATCCATCCAATCCACTCCCTCCTAAACCGTCGCACTCCGATCCCCCGGATCCGGTTACCGATCATCGCTCCGGCGACTATTCTCCCTATCCCAAGCTTGACCCTAGCGATGTTGCTCCGCCGCTGATGCCGGAGAACTGGACCACTGTCCCCATGAGCTCCCAACCCCAACATCCTCCTCCGCCTCAAACTCAGCCGAACAGTGAGCCTCGTGCTCCGATCTCTGAGGGAAATGCTACCACTCTGCCGACTGAAGCTAATCCCTATGTTTCTGCGGCTCCAGCCTCTGGAAATCCATCTTCCGCCAAGAATACGGTGGATTCCATGAAGGAGATGCTTGGAAGATGGGGAAAGAAGGCTGCTGAGGCAACCAAGAAGGCCGAGGATCTTGCTGGAAATATGTGGCAGCACTTGAAAACAGGGCCTAGCATTACTGATGCTGCTGTGGCAAGAATTGCTCAAGGGACGAAAGTTCTTGCAGAAGGTGGTTATGAGAAGATCTTCCGACAGACTTTTGAGAGTATTCCGGAAGAGAAACTTCAGAAGGCGTTTGCGTGCTACTTATCCACATCAGCTGGTCCAGTGATGGGAACTTTGTACGTATCAACGGCTAAACTTGCCTTTTGCAGTGACGATCCTCTTTCGTACAAAGTCGGTGACAAGACTCAATGGAGCCTTTACAAGGTGGTGATCCCGCTGCATCACCTGAAAGCAGTCAACCCATCAACAAGCAAAGCAAAACCGGCTGAAAAGTTCATACAAGTTATCTCCATTGACAACCATGAATTCTGGTTCATGGGCTTCGTATATTATGATAGTGCAGTCAAAATTCTTGGAGAAGCCCTGCAGCCCAACAACCCATTGTCTGTGTGA 927 51.13 MSQSQPQPQPQPQPQPHPDPSNPLPPKPSHSDPPDPVTDHRSGDYSPYPKLDPSDVAPPLMPENWTTVPMSSQPQHPPPPQTQPNSEPRAPISEGNATTLPTEANPYVSAAPASGNPSSAKNTVDSMKEMLGRWGKKAAEATKKAEDLAGNMWQHLKTGPSITDAAVARIAQGTKVLAEGGYEKIFRQTFESIPEEKLQKAFACYLSTSAGPVMGTLYVSTAKLAFCSDDPLSYKVGDKTQWSLYKVVIPLHHLKAVNPSTSKAKPAEKFIQVISIDNHEFWFMGFVYYDSAVKILGEALQPNNPLSV 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2671482 2675132 + CmoCh05G005540.1 Cmo05g00554 382689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00554 308 Pfam GRAM domain 185 301 IPR004182 -
Cmo05g00554 308 SMART gram2001c 184 261 IPR004182 -
Cmo05g00554 308 MobiDBLite consensus disorder prediction 87 123 - -
Cmo05g00554 308 PANTHER GEM-LIKE PROTEIN 1 38 303 - -
Cmo05g00554 308 MobiDBLite consensus disorder prediction 7 32 - -
Cmo05g00554 308 MobiDBLite consensus disorder prediction 1 123 - -
Cmo05g00554 308 Gene3D - 182 301 IPR011993 -
Cmo05g00554 308 PANTHER GEM-LIKE PROTEIN 2 38 303 IPR037848 -
Cmo05g00554 308 MobiDBLite consensus disorder prediction 72 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00554 - - - cmos:111462732 553.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00554 Cmo-Chr5:2671482 Cmo19g00196 Cmo-Chr19:1265901 1.70E-59 dispersed
Cmo12g00173 Cmo-Chr12:1139607 Cmo05g00554 Cmo-Chr5:2671482 4.11E-152 wgd
Cmo03g00873 Cmo-Chr3:6809393 Cmo05g00554 Cmo-Chr5:2671482 7.91E-90 wgd
Cmo05g00554 Cmo-Chr5:2671482 Cmo07g00565 Cmo-Chr7:2551477 1.09E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g478 . . . . . . . . Cmo05g00554 . . . . . Sed07g2378 . . Bhi04g00809 Tan02g2443 Cmetu10g1308 . Hepe10g0452 . Lcy13g1505 Cla08g01144 Cam08g1604 Cec08g1175 Cco08g1301 Clacu08g1303 . Cre08g1087 Cone6ag1542 Cone9ag1457 . . . . . Cme03g01828 Blo17g00103 Blo18g00113 . . Bpe02g01139 . Bma01g01388 . . . . . Cma05g00526 Car05g00475 . Cpe11g00464 . . . . . . . . . . . . . . . Lsi08g01002 Csa02g02186 Chy03g01331 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007813 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00554 Cmo_Chr05 FPKM 6.413727 9.214629 14.477638 13.646716 2.629038 2.950838 2.477878 18.968702 17.634817 17.846592