Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00555 ATGGATTTCGATGAGGAGCACGACGACCAAGACGATGAAGTAATAGAGGAGATGCCCATCGCCCACCACTTCGACGCCACTCCGCCGCCGCCCGGTGAGGGTTCATCGGCGGAGAGGAAAACCGGAGGCGGCGGAGGAGGAGGAGGTAATATTAGATATAAAGAGTGTTTGAAGAATCACGCCATCGGAATCGGAGGGCAGGCGGTGGATGGGTGCGGCGAGTTTTTACCGGCGGGAGAAGAAGGGAGTATAGATGCACTAAAATGCGCCGCGTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACGGATTCAGATCAGGGACATTACTATAACCTACACCAACATCATCAATTTTCTTATCGTGGGCCCCCACACCCTTCTACTTACGTGTACTTGACAGGTGCTCCAATTCAGCAGAGGCCATTGGCGTTACCGGCGGCAGTGTCAGGGAGGGAGGAGGAGGATAACACATCTAATCCAAGCAGTAGCGGCGGCGGAAGTGGGTTGTTGAAGAAGAGATTCCGGACAAAGTTCAGCCAAGAACAAAAGGAGAAAATGTTGGAGTTTGCTGAGAAAGTTGGGTGGACAATTCAAAAACACGATGAGGCTGACGTGGAAGAGTTCTGTCGGACCACCGGTGTCCGGCGGCAGGTGCTCAAGGTTTGGATGCATAACAACAAGCATACTTTGGGGAAGAAGTGCTCAAATGATTAG 717 51.88 MDFDEEHDDQDDEVIEEMPIAHHFDATPPPPGEGSSAERKTGGGGGGGGNIRYKECLKNHAIGIGGQAVDGCGEFLPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYNLHQHHQFSYRGPPHPSTYVYLTGAPIQQRPLALPAAVSGREEEDNTSNPSSSGGGSGLLKKRFRTKFSQEQKEKMLEFAEKVGWTIQKHDEADVEEFCRTTGVRRQVLKVWMHNNKHTLGKKCSND 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2677874 2678590 - CmoCh05G005550.1 Cmo05g00555 382690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00555 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 234 - -
Cmo05g00555 238 Gene3D - 156 233 - -
Cmo05g00555 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 44 234 - -
Cmo05g00555 238 MobiDBLite consensus disorder prediction 153 167 - -
Cmo05g00555 238 MobiDBLite consensus disorder prediction 1 47 - -
Cmo05g00555 238 MobiDBLite consensus disorder prediction 1 15 - -
Cmo05g00555 238 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 172 228 IPR006455 -
Cmo05g00555 238 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 52 102 IPR006456 -
Cmo05g00555 238 Pfam ZF-HD protein dimerisation region 51 103 IPR006456 -
Cmo05g00555 238 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 102 IPR006456 -
Cmo05g00555 238 SUPERFAMILY Homeodomain-like 158 233 IPR009057 -
Cmo05g00555 238 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00894 Cmo-Chr4:4510277 Cmo05g00555 Cmo-Chr5:2677874 6.14E-54 dispersed
Cmo05g00555 Cmo-Chr5:2677874 Cmo12g00418 Cmo-Chr12:2570610 3.43E-60 dispersed
Cmo03g00874 Cmo-Chr3:6821712 Cmo05g00555 Cmo-Chr5:2677874 5.63E-69 wgd
Cmo05g00555 Cmo-Chr5:2677874 Cmo07g00569 Cmo-Chr7:2559410 3.81E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9821 PF04770 ZF-HD_dimer 2.50E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00555 - - csv:101216697 342.428