Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00555 ATGGATTTCGATGAGGAGCACGACGACCAAGACGATGAAGTAATAGAGGAGATGCCCATCGCCCACCACTTCGACGCCACTCCGCCGCCGCCCGGTGAGGGTTCATCGGCGGAGAGGAAAACCGGAGGCGGCGGAGGAGGAGGAGGTAATATTAGATATAAAGAGTGTTTGAAGAATCACGCCATCGGAATCGGAGGGCAGGCGGTGGATGGGTGCGGCGAGTTTTTACCGGCGGGAGAAGAAGGGAGTATAGATGCACTAAAATGCGCCGCGTGTAACTGTCACCGGAATTTCCACCGGAAAGAAACGGATTCAGATCAGGGACATTACTATAACCTACACCAACATCATCAATTTTCTTATCGTGGGCCCCCACACCCTTCTACTTACGTGTACTTGACAGGTGCTCCAATTCAGCAGAGGCCATTGGCGTTACCGGCGGCAGTGTCAGGGAGGGAGGAGGAGGATAACACATCTAATCCAAGCAGTAGCGGCGGCGGAAGTGGGTTGTTGAAGAAGAGATTCCGGACAAAGTTCAGCCAAGAACAAAAGGAGAAAATGTTGGAGTTTGCTGAGAAAGTTGGGTGGACAATTCAAAAACACGATGAGGCTGACGTGGAAGAGTTCTGTCGGACCACCGGTGTCCGGCGGCAGGTGCTCAAGGTTTGGATGCATAACAACAAGCATACTTTGGGGAAGAAGTGCTCAAATGATTAG 717 51.88 MDFDEEHDDQDDEVIEEMPIAHHFDATPPPPGEGSSAERKTGGGGGGGGNIRYKECLKNHAIGIGGQAVDGCGEFLPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYNLHQHHQFSYRGPPHPSTYVYLTGAPIQQRPLALPAAVSGREEEDNTSNPSSSGGGSGLLKKRFRTKFSQEQKEKMLEFAEKVGWTIQKHDEADVEEFCRTTGVRRQVLKVWMHNNKHTLGKKCSND 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2677874 2678590 - CmoCh05G005550.1 Cmo05g00555 382690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00555 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 234 - -
Cmo05g00555 238 Gene3D - 156 233 - -
Cmo05g00555 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 44 234 - -
Cmo05g00555 238 MobiDBLite consensus disorder prediction 153 167 - -
Cmo05g00555 238 MobiDBLite consensus disorder prediction 1 47 - -
Cmo05g00555 238 MobiDBLite consensus disorder prediction 1 15 - -
Cmo05g00555 238 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 172 228 IPR006455 -
Cmo05g00555 238 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 52 102 IPR006456 -
Cmo05g00555 238 Pfam ZF-HD protein dimerisation region 51 103 IPR006456 -
Cmo05g00555 238 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 102 IPR006456 -
Cmo05g00555 238 SUPERFAMILY Homeodomain-like 158 233 IPR009057 -
Cmo05g00555 238 MobiDBLite consensus disorder prediction 145 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00555 - - - csv:101216697 342.428
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00894 Cmo-Chr4:4510277 Cmo05g00555 Cmo-Chr5:2677874 6.14E-54 dispersed
Cmo05g00555 Cmo-Chr5:2677874 Cmo12g00418 Cmo-Chr12:2570610 3.43E-60 dispersed
Cmo03g00874 Cmo-Chr3:6821712 Cmo05g00555 Cmo-Chr5:2677874 5.63E-69 wgd
Cmo05g00555 Cmo-Chr5:2677874 Cmo07g00569 Cmo-Chr7:2559410 3.81E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00555 . 51 231 ZF-HD Transcription Factor Family AT4G24660 57.6 3.5e-51 199.1
Cmo07g00569 . 48 243 ZF-HD Transcription Factor Family AT4G24660 52.0 2.7e-48 189.5
Cmo12g00418 CST 85 295 ZF-HD Transcription Factor Family AT4G24660 50.7 3.6e-48 189.1
Cmo04g00894 CCT,ECH 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 4.0e-47 185.7
Cmo04g01997 . 81 280 ZF-HD Transcription Factor Family AT2G02540 54.9 4.6e-51 199.1
Cmo06g00007 . 70 262 ZF-HD Transcription Factor Family AT2G02540 50.5 1.9e-49 193.7
Cmo04g01997 . 78 283 ZF-HD Transcription Factor Family AT1G14440 54.7 8.2e-56 214.9
Cmo06g00007 . 67 262 ZF-HD Transcription Factor Family AT1G14440 54.3 2.2e-53 206.8
Cmo07g00483 CCT,CST,ECH 120 322 ZF-HD Transcription Factor Family AT2G18350 55.9 1.0e-51 201.1
Cmo14g00601 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 2.9e-49 193.0
Cmo04g02895 . 25 246 ZF-HD Transcription Factor Family AT5G15210 53.6 8.5e-49 191.4
Cmo11g01047 . 13 287 ZF-HD Transcription Factor Family AT5G15210 50.4 1.8e-46 183.7
Cmo15g00285 . 690 912 ZF-HD Transcription Factor Family AT5G15210 54.6 6.7e-46 181.8
Cmo11g01047 . 23 253 ZF-HD Transcription Factor Family AT3G28920 63.6 2.0e-57 220.3
Cmo14g00601 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.9 2.8e-56 216.5
Cmo04g02895 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.1 2.4e-55 213.4
Cmo15g00285 . 689 914 ZF-HD Transcription Factor Family AT3G28920 57.6 7.2e-52 201.8
Cmo04g02895 . 26 252 ZF-HD Transcription Factor Family AT5G39760 53.6 1.9e-50 197.2
Cmo15g00285 . 691 918 ZF-HD Transcription Factor Family AT5G39760 56.2 5.5e-50 195.7
Cmo14g00601 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 9.4e-50 194.9
Cmo11g01047 . 31 281 ZF-HD Transcription Factor Family AT5G39760 54.9 1.6e-49 194.1
Cmo04g02895 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 3.4e-49 192.6
Cmo15g00285 . 724 915 ZF-HD Transcription Factor Family AT1G69600 51.0 1.1e-47 187.6
Cmo18g01173 . 142 321 ZF-HD Transcription Factor Family AT1G69600 52.1 1.1e-47 187.6
Cmo04g01997 . 81 280 ZF-HD Transcription Factor Family AT2G02540 54.9 4.6e-51 199.1
Cmo06g00007 . 70 262 ZF-HD Transcription Factor Family AT2G02540 50.5 1.9e-49 193.7
Cmo05g00555 . 51 231 ZF-HD Transcription Factor Family AT4G24660 57.6 3.5e-51 199.1
Cmo07g00569 . 48 243 ZF-HD Transcription Factor Family AT4G24660 52.0 2.7e-48 189.5
Cmo12g00418 CST 85 295 ZF-HD Transcription Factor Family AT4G24660 50.7 3.6e-48 189.1
Cmo04g00894 CCT,ECH 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 4.0e-47 185.7
Cmo04g02895 . 26 252 ZF-HD Transcription Factor Family AT5G39760 53.6 1.9e-50 197.2
Cmo15g00285 . 691 918 ZF-HD Transcription Factor Family AT5G39760 56.2 5.5e-50 195.7
Cmo14g00601 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 9.4e-50 194.9
Cmo11g01047 . 31 281 ZF-HD Transcription Factor Family AT5G39760 54.9 1.6e-49 194.1
Cmo07g00483 CCT,CST,ECH 120 322 ZF-HD Transcription Factor Family AT2G18350 55.9 1.0e-51 201.1
Cmo04g02895 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 3.4e-49 192.6
Cmo15g00285 . 724 915 ZF-HD Transcription Factor Family AT1G69600 51.0 1.1e-47 187.6
Cmo18g01173 . 142 321 ZF-HD Transcription Factor Family AT1G69600 52.1 1.1e-47 187.6
Cmo14g00601 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 2.9e-49 193.0
Cmo04g02895 . 25 246 ZF-HD Transcription Factor Family AT5G15210 53.6 8.5e-49 191.4
Cmo11g01047 . 13 287 ZF-HD Transcription Factor Family AT5G15210 50.4 1.8e-46 183.7
Cmo15g00285 . 690 912 ZF-HD Transcription Factor Family AT5G15210 54.6 6.7e-46 181.8
Cmo04g01997 . 78 283 ZF-HD Transcription Factor Family AT1G14440 54.7 8.2e-56 214.9
Cmo06g00007 . 67 262 ZF-HD Transcription Factor Family AT1G14440 54.3 2.2e-53 206.8
Cmo11g01047 . 23 253 ZF-HD Transcription Factor Family AT3G28920 63.6 2.0e-57 220.3
Cmo14g00601 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.9 2.8e-56 216.5
Cmo04g02895 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.1 2.4e-55 213.4
Cmo15g00285 . 689 914 ZF-HD Transcription Factor Family AT3G28920 57.6 7.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9821 PF04770 ZF-HD_dimer 2.50E-29 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00555 Cmo_Chr05 FPKM 1.109232 2.067729 0.06492 0.35883 1.111462 0.856465 1.443098 1.454071 1.724703 1.25303